Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   OG241_RS15995 Genome accession   NZ_CP109551
Coordinates   3580588..3580797 (-) Length   69 a.a.
NCBI ID   WP_405816062.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01390     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3575588..3585797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG241_RS15980 (OG241_15955) - 3575684..3577327 (+) 1644 WP_405816058.1 FAD-dependent monooxygenase -
  OG241_RS15985 (OG241_15960) - 3577485..3578969 (-) 1485 WP_405816059.1 FAD-dependent monooxygenase -
  OG241_RS15990 (OG241_15965) - 3579140..3579670 (+) 531 WP_405816061.1 PadR family transcriptional regulator -
  OG241_RS15995 (OG241_15975) sinR 3580588..3580797 (-) 210 WP_405816062.1 helix-turn-helix domain-containing protein Regulator
  OG241_RS16000 (OG241_15980) - 3581049..3582314 (+) 1266 WP_405816063.1 tyrosine-type recombinase/integrase -
  OG241_RS16005 (OG241_15985) - 3582648..3583103 (+) 456 WP_405816064.1 GNAT family N-acetyltransferase -
  OG241_RS16010 (OG241_15990) - 3583100..3583246 (+) 147 WP_405816065.1 hypothetical protein -
  OG241_RS16015 (OG241_15995) - 3583332..3583487 (+) 156 WP_405816066.1 hypothetical protein -
  OG241_RS16020 (OG241_16000) - 3583649..3584623 (+) 975 WP_405816067.1 enoyl-CoA hydratase/isomerase family protein -
  OG241_RS16025 (OG241_16005) - 3585187..3585615 (+) 429 WP_405826243.1 ester cyclase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7839.87 Da        Isoelectric Point: 5.0909

>NTDB_id=678481 OG241_RS15995 WP_405816062.1 3580588..3580797(-) (sinR) [Streptomyces sp. NBC_01390]
MQIRRLREERGYSLEELAERSGLSFRGLIYIEHGQRSPSVLTLLDIAAGLDVEPGELVNHITREEFGKS

Nucleotide


Download         Length: 210 bp        

>NTDB_id=678481 OG241_RS15995 WP_405816062.1 3580588..3580797(-) (sinR) [Streptomyces sp. NBC_01390]
ATGCAGATCCGGCGACTCCGTGAAGAGCGGGGCTACAGCTTGGAAGAACTCGCAGAGCGCAGTGGGTTGAGCTTTCGCGG
CCTCATCTACATCGAGCACGGGCAGCGCAGCCCCAGTGTGCTCACGCTCTTGGACATTGCAGCGGGGCTCGACGTGGAGC
CGGGGGAACTCGTTAATCACATCACACGGGAAGAATTCGGAAAATCATAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(3-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

38.462

94.203

0.362