Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MYB88_RS00415 Genome accession   NZ_CP095786
Coordinates   88896..89525 (+) Length   209 a.a.
NCBI ID   WP_223684569.1    Uniprot ID   -
Organism   Escherichia fergusonii strain EF21JD053     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 83896..94525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYB88_RS00395 (MYB88_00395) - 84303..86063 (-) 1761 WP_223684571.1 Lon protease family protein -
  MYB88_RS00400 (MYB88_00400) matP 86248..86703 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  MYB88_RS00405 (MYB88_00405) ompA 86758..87813 (-) 1056 WP_024256413.1 porin OmpA -
  MYB88_RS00410 (MYB88_00410) sulA 88170..88679 (-) 510 WP_181674319.1 SOS-induced cell division inhibitor SulA -
  MYB88_RS00415 (MYB88_00415) sxy/tfoX 88896..89525 (+) 630 WP_223684569.1 TfoX/Sxy family DNA transformation protein Regulator
  MYB88_RS00420 (MYB88_00420) yccS 89488..91641 (-) 2154 WP_105284202.1 YccS family putative transporter -
  MYB88_RS00425 (MYB88_00425) - 91661..92107 (-) 447 WP_002431615.1 YccF domain-containing protein -
  MYB88_RS00430 (MYB88_00430) helD 92230..94284 (+) 2055 WP_223684568.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24403.37 Da        Isoelectric Point: 9.3449

>NTDB_id=678460 MYB88_RS00415 WP_223684569.1 88896..89525(+) (sxy/tfoX) [Escherichia fergusonii strain EF21JD053]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRDCEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=678460 MYB88_RS00415 WP_223684569.1 88896..89525(+) (sxy/tfoX) [Escherichia fergusonii strain EF21JD053]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGACTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.378

100

0.694