Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MX625_RS04300 Genome accession   NZ_CP095774
Coordinates   920763..921320 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 34Pae8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 915763..926320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX625_RS04285 pilY1 915855..919346 (-) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -
  MX625_RS04290 pilX 919358..919945 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  MX625_RS04295 pilW 919942..920766 (-) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  MX625_RS04300 pilV 920763..921320 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  MX625_RS04305 - 921311..921817 (-) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  MX625_RS04310 - 921923..922432 (-) 510 WP_015503652.1 Tfp pilus assembly protein FimT/FimU -
  MX625_RS04315 thiO 922567..923661 (+) 1095 WP_003094695.1 glycine oxidase ThiO -
  MX625_RS04320 pilR 923707..925044 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=678366 MX625_RS04300 WP_003094697.1 920763..921320(-) (pilV) [Pseudomonas aeruginosa strain 34Pae8]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=678366 MX625_RS04300 WP_003094697.1 920763..921320(-) (pilV) [Pseudomonas aeruginosa strain 34Pae8]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978