Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG741_RS29315 Genome accession   NZ_CP109530
Coordinates   6362469..6363254 (-) Length   261 a.a.
NCBI ID   WP_142213283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01410     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6357469..6368254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG741_RS29300 (OG741_29255) - 6357668..6358405 (+) 738 WP_405605837.1 GNAT family N-acetyltransferase -
  OG741_RS29305 (OG741_29260) - 6358481..6360313 (+) 1833 WP_405602835.1 IucA/IucC family protein -
  OG741_RS29310 (OG741_29265) - 6360363..6362357 (+) 1995 WP_405602837.1 ATP-dependent DNA helicase -
  OG741_RS29315 (OG741_29270) dinR/lexA 6362469..6363254 (-) 786 WP_142213283.1 transcriptional repressor LexA Regulator
  OG741_RS29320 (OG741_29275) nrdR 6363842..6364354 (+) 513 WP_266489153.1 transcriptional regulator NrdR -
  OG741_RS29325 (OG741_29280) - 6364528..6367425 (+) 2898 WP_405602840.1 vitamin B12-dependent ribonucleotide reductase -
  OG741_RS29330 (OG741_29285) - 6367503..6368024 (-) 522 WP_405602842.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28298.05 Da        Isoelectric Point: 8.0891

>NTDB_id=678359 OG741_RS29315 WP_142213283.1 6362469..6363254(-) (dinR/lexA) [Streptomyces sp. NBC_01410]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=678359 OG741_RS29315 WP_142213283.1 6362469..6363254(-) (dinR/lexA) [Streptomyces sp. NBC_01410]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACACCCGAGGGGCCCAAGCCCACGCGTTCGCTGCCCGGCCGACCTCCAGGGATCCGAGCCGACAGCT
CCGGTCTCACGGATCGGCAGCGGCGCGTCATCGAGGTGATCCGTGACTCCGTACAGCGTCGGGGATACCCGCCGTCGATG
CGTGAGATCGGCCAGGCGGTCGGGCTGTCCAGCACTTCTTCCGTGGCACACCAGCTCATGGCTCTGGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCAGGGCGTACGAGGTGCGCGGCTCCGACCAGCCCAGCACGCAGCCGACGGACACGA
CCGGCAAGCCCGCCGCCTCGTATGTTCCGCTCGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAAGAGTCCGTC
GAGGACGTCTTCCCGCTGCCCCGCCAGCTTGTGGGTGACGGCGAGTTGTTCGTGCTCAAGGTCGTCGGCGACTCGATGAT
CGAGGCCGCGATCTGCGACGGCGACTGGGTGACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCGA
TGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGAACGGCCATGTGTGGCTCCTCCCGCACAACGCGGCGTAC
CAGCCGATTCCGGGTGATGAGGCAACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372