Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG741_RS21150 Genome accession   NZ_CP109530
Coordinates   4613025..4613240 (+) Length   71 a.a.
NCBI ID   WP_405600126.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01410     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4608025..4618240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG741_RS21130 (OG741_21110) - 4609029..4610090 (-) 1062 WP_405600118.1 hypothetical protein -
  OG741_RS21135 (OG741_21115) - 4610203..4610787 (-) 585 WP_405600121.1 TIGR03086 family metal-binding protein -
  OG741_RS21140 (OG741_21120) - 4611084..4612004 (-) 921 WP_405600123.1 helix-turn-helix domain-containing protein -
  OG741_RS21145 (OG741_21125) - 4612235..4612642 (+) 408 WP_405600125.1 RidA family protein -
  OG741_RS21150 (OG741_21135) dinR/lexA 4613025..4613240 (+) 216 WP_405600126.1 LexA family protein Regulator
  OG741_RS21155 (OG741_21140) - 4613335..4614111 (-) 777 WP_405600129.1 DUF72 domain-containing protein -
  OG741_RS21160 (OG741_21145) - 4614197..4615021 (-) 825 WP_405605691.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG741_RS21165 (OG741_21150) - 4615312..4616199 (-) 888 WP_405600131.1 serine hydrolase domain-containing protein -
  OG741_RS21170 (OG741_21155) - 4616325..4616660 (+) 336 WP_405600133.1 ArsR/SmtB family transcription factor -
  OG741_RS21175 (OG741_21160) - 4616660..4617388 (+) 729 WP_405600136.1 cation transporter -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 8031.10 Da        Isoelectric Point: 9.4763

>NTDB_id=678333 OG741_RS21150 WP_405600126.1 4613025..4613240(+) (dinR/lexA) [Streptomyces sp. NBC_01410]
MVDRLSARQESILRCITEWIAEHGEAPTIREIGESVGLSSTSSVAYQLRRLEQAGLISRSRRSWRSCRIGN

Nucleotide


Download         Length: 216 bp        

>NTDB_id=678333 OG741_RS21150 WP_405600126.1 4613025..4613240(+) (dinR/lexA) [Streptomyces sp. NBC_01410]
GTGGTCGATCGCCTGAGCGCGCGGCAGGAGAGCATTCTGCGGTGCATCACGGAGTGGATAGCCGAACACGGCGAGGCCCC
GACGATCCGGGAGATCGGTGAGAGTGTCGGCCTGTCGAGCACGTCGTCGGTGGCCTACCAGCTCCGCCGGTTGGAACAGG
CCGGGCTCATCAGCCGCAGCCGCCGGAGCTGGCGCTCCTGCCGCATCGGCAACTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.97

92.958

0.437