Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG741_RS13275 Genome accession   NZ_CP109530
Coordinates   2892570..2894303 (+) Length   577 a.a.
NCBI ID   WP_405597335.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01410     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887570..2899303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG741_RS13245 (OG741_13230) - 2889104..2889535 (+) 432 WP_405597328.1 transposase -
  OG741_RS13265 (OG741_13250) - 2890697..2890996 (+) 300 WP_405597330.1 YtxH domain-containing protein -
  OG741_RS13270 (OG741_13255) - 2891033..2892478 (+) 1446 WP_405597333.1 FGGY family carbohydrate kinase -
  OG741_RS13275 (OG741_13260) rcrP 2892570..2894303 (+) 1734 WP_405597335.1 ABC transporter ATP-binding protein Regulator
  OG741_RS13280 (OG741_13265) rcrQ 2894300..2896222 (+) 1923 WP_405597337.1 ABC transporter ATP-binding protein Regulator
  OG741_RS13285 (OG741_13270) - 2896498..2897748 (-) 1251 Protein_2634 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62600.68 Da        Isoelectric Point: 5.7520

>NTDB_id=678317 OG741_RS13275 WP_405597335.1 2892570..2894303(+) (rcrP) [Streptomyces sp. NBC_01410]
MLIRLLRTHLGPYRQPITLLVVLQLLQTSATLYLPTLNADIIDNGVVKGNTGYILRLGALMIAVSVVQVLCNIGAVYIGA
QTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEAGRFRGANNELTDVSLSTGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVIP
PIKAVRELRRHGHLEVRAVEFRYPGAEESVLRDVTLLARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
DLDPALMAKTVGLVPQRPYLFSGTVATNLRYGKPDASDEELWQALDVAQAADFVRELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETSEATVVIVAQRVSTIRDADRIVVLDEGQVVGTGSHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=678317 OG741_RS13275 WP_405597335.1 2892570..2894303(+) (rcrP) [Streptomyces sp. NBC_01410]
GTGCTGATACGACTACTGCGGACGCACTTGGGTCCGTACAGACAACCGATCACCCTCCTTGTGGTGCTGCAGCTGCTCCA
GACCAGCGCCACCCTTTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTGGTGAAGGGGAACACGGGCTACA
TCCTGCGGCTCGGCGCCCTCATGATCGCGGTGAGCGTCGTCCAGGTGCTCTGCAACATCGGAGCTGTCTATATCGGCGCG
CAGACCGCCGCCGCGCTCGGGCGTGACGTCCGGGCCGCTGTCTTCGACCGGGTGCAGAGCTTCTCCGCACGGGAGGTCGG
CCACTTCGGCGCTCCGTCCCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CGTTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTGCCGCTGTCGGCGGTC
CTGCTCGCGGTCGTGCCGGTGCTGGGCATCGCCGTCTCACTGATCGTCAAGAAGATGCGGCCGCTGTTTCGGACCATGCA
GGAGCGTCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTACGCGACG
AGTACGAGGCCGGGCGCTTCCGCGGCGCCAACAACGAGCTCACCGATGTGTCCCTGTCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCCGTCGCCGTCGTCTGGTTCGGCGCACACCGGGTCGACAGCGG
CGCGATCCAGATCGGCGCCCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGGATCGAGGAGGTGCTGGACACTCGCTCGAGCGTGATCCCG
CCGATCAAGGCCGTACGGGAGCTGCGCCGCCACGGGCATCTGGAGGTACGGGCCGTGGAGTTCCGCTATCCGGGAGCCGA
GGAGTCGGTGCTGCGCGATGTCACCCTGCTGGCGCGGCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGAA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGGGAGGTGCTCGTCGACGGCGTGGATGTGCGT
GACCTCGATCCGGCGCTGATGGCGAAGACGGTGGGGCTCGTGCCCCAGCGGCCGTATCTCTTCTCCGGGACCGTGGCCAC
CAATCTGCGCTACGGGAAGCCCGACGCGAGCGACGAGGAACTGTGGCAGGCGCTGGACGTGGCGCAGGCGGCCGACTTCG
TACGGGAACTCGAAGGCGGGCTGAACGCCCCGATCGCGCAGGGCGGTACCAATGTCTCCGGCGGTCAGCGCCAGCGCCTC
GCGATCGCGCGGACCCTGGTGCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCCACGGA
CGCGGCGCTGCGAGGGGCGCTCTCCCGCGAGACCTCCGAGGCGACGGTGGTGATAGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCCGACCGCATCGTCGTCCTGGACGAGGGGCAGGTCGTGGGGACCGGAAGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGAGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406