Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MYW48_RS21610 Genome accession   NZ_CP095767
Coordinates   4272935..4274674 (-) Length   579 a.a.
NCBI ID   WP_000947759.1    Uniprot ID   A0A9W7Q8P2
Organism   Bacillus cereus strain CDHWZ7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4267935..4279674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYW48_RS21580 (MYW48_21580) - 4268195..4268428 (+) 234 WP_001190195.1 DUF2627 domain-containing protein -
  MYW48_RS21585 (MYW48_21585) - 4268478..4269206 (-) 729 WP_000172594.1 glycerophosphodiester phosphodiesterase -
  MYW48_RS21590 (MYW48_21590) - 4269257..4269403 (+) 147 WP_001247671.1 YycC family protein -
  MYW48_RS21595 (MYW48_21595) - 4269617..4270180 (-) 564 WP_106103227.1 PRK06770 family protein -
  MYW48_RS21600 (MYW48_21600) spo0A 4270434..4271228 (-) 795 WP_014894889.1 sporulation transcription factor Spo0A Regulator
  MYW48_RS21605 (MYW48_21605) spoIVB 4271518..4272816 (-) 1299 WP_106081564.1 SpoIVB peptidase -
  MYW48_RS21610 (MYW48_21610) recN 4272935..4274674 (-) 1740 WP_000947759.1 DNA repair protein RecN Machinery gene
  MYW48_RS21615 (MYW48_21615) argR 4274939..4275388 (-) 450 WP_001032580.1 arginine repressor ArgR -
  MYW48_RS21620 (MYW48_21620) - 4275531..4276370 (-) 840 WP_000111874.1 TlyA family RNA methyltransferase -
  MYW48_RS21625 (MYW48_21625) dxs 4276374..4278266 (-) 1893 WP_000366457.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MYW48_RS21630 (MYW48_21630) ispA 4278568..4279458 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65835.99 Da        Isoelectric Point: 4.8231

>NTDB_id=678307 MYW48_RS21610 WP_000947759.1 4272935..4274674(-) (recN) [Bacillus cereus strain CDHWZ7]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKSLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENYDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KRAGNAEEPLVEGAPVRLTVDGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=678307 MYW48_RS21610 WP_000947759.1 4272935..4274674(-) (recN) [Bacillus cereus strain CDHWZ7]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGATCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAATCACTTGTTGATATTCATGGACAGCACG
AAACACAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAATGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCAGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATTATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAGGAAATTTTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAGAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGCGAATTATG
AAGAGAGCAGGAAATGCAGAAGAACCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGTGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGAGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTAGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601