Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | JLF30_RS05610 | Genome accession | NZ_AP022478 |
| Coordinates | 1188128..1189120 (+) | Length | 330 a.a. |
| NCBI ID | WP_000081550.1 | Uniprot ID | A0A370V765 |
| Organism | Escherichia coli strain STN0717-11 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1183128..1194120
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF30_RS05580 (STN0717ESC11_10910) | ispD | 1183189..1183899 (+) | 711 | WP_000246141.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| JLF30_RS05585 (STN0717ESC11_10920) | ispF | 1183899..1184378 (+) | 480 | WP_001219242.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| JLF30_RS05590 (STN0717ESC11_10930) | truD | 1184375..1185424 (+) | 1050 | WP_000568953.1 | tRNA pseudouridine(13) synthase TruD | - |
| JLF30_RS05595 (STN0717ESC11_10940) | surE | 1185405..1186166 (+) | 762 | WP_001305779.1 | 5'/3'-nucleotidase SurE | - |
| JLF30_RS05600 (STN0717ESC11_10950) | pcm | 1186160..1186786 (+) | 627 | WP_000254708.1 | protein-L-isoaspartate O-methyltransferase | - |
| JLF30_RS05605 (STN0717ESC11_10960) | nlpD | 1186926..1188065 (+) | 1140 | WP_001272592.1 | murein hydrolase activator NlpD | - |
| JLF30_RS05610 (STN0717ESC11_10970) | rpoS | 1188128..1189120 (+) | 993 | WP_000081550.1 | RNA polymerase sigma factor RpoS | Regulator |
| JLF30_RS05615 (STN0717ESC11_10980) | - | 1189241..1189648 (-) | 408 | WP_001208065.1 | MarR family transcriptional regulator | - |
| JLF30_RS05620 (STN0717ESC11_10990) | - | 1189795..1190388 (+) | 594 | WP_001237176.1 | non-oxidative hydroxyarylic acid decarboxylases subunit B | - |
| JLF30_RS05625 (STN0717ESC11_11000) | - | 1190388..1191815 (+) | 1428 | WP_000863186.1 | non-oxidative hydroxyarylic acid decarboxylases subunit C | - |
| JLF30_RS05630 (STN0717ESC11_11010) | - | 1191826..1192062 (+) | 237 | WP_000562983.1 | non-oxidative hydroxyarylic acid decarboxylases subunit D | - |
| JLF30_RS05635 (STN0717ESC11_11020) | pphB | 1192104..1192760 (-) | 657 | WP_024187450.1 | protein-serine/threonine phosphatase | - |
| JLF30_RS05640 (STN0717ESC11_11030) | - | 1192785..1193648 (-) | 864 | WP_001223107.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 330 a.a. Molecular weight: 37972.84 Da Isoelectric Point: 4.5597
>NTDB_id=67830 JLF30_RS05610 WP_000081550.1 1188128..1189120(+) (rpoS) [Escherichia coli strain STN0717-11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
Nucleotide
Download Length: 993 bp
>NTDB_id=67830 JLF30_RS05610 WP_000081550.1 1188128..1189120(+) (rpoS) [Escherichia coli strain STN0717-11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
73.065 |
97.879 |
0.715 |