Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MYW48_RS10290 Genome accession   NZ_CP095767
Coordinates   2040034..2040321 (+) Length   95 a.a.
NCBI ID   WP_106081302.1    Uniprot ID   -
Organism   Bacillus cereus strain CDHWZ7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2035034..2045321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYW48_RS10270 (MYW48_10270) - 2036216..2036413 (+) 198 WP_014894789.1 DUF4083 domain-containing protein -
  MYW48_RS10275 (MYW48_10275) - 2036442..2036903 (+) 462 WP_000024996.1 NUDIX hydrolase -
  MYW48_RS10280 (MYW48_10280) nadE 2036945..2037763 (-) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  MYW48_RS10285 (MYW48_10285) - 2038038..2039918 (+) 1881 WP_001025981.1 ABC transporter permease -
  MYW48_RS10290 (MYW48_10290) abrB 2040034..2040321 (+) 288 WP_106081302.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MYW48_RS10295 (MYW48_10295) - 2040596..2041543 (+) 948 WP_106081301.1 serine protease -
  MYW48_RS10300 (MYW48_10300) - 2041583..2041891 (-) 309 WP_001259903.1 helix-turn-helix transcriptional regulator -
  MYW48_RS10305 (MYW48_10305) - 2041998..2042933 (+) 936 WP_000877950.1 aldo/keto reductase -
  MYW48_RS10310 (MYW48_10310) - 2042981..2044156 (+) 1176 WP_247727892.1 MFS transporter -
  MYW48_RS10315 (MYW48_10315) - 2044477..2044701 (-) 225 WP_000162602.1 hypothetical protein -
  MYW48_RS10320 (MYW48_10320) - 2044786..2045133 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10603.31 Da        Isoelectric Point: 4.8408

>NTDB_id=678296 MYW48_RS10290 WP_106081302.1 2040034..2040321(+) (abrB) [Bacillus cereus strain CDHWZ7]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNSCQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=678296 MYW48_RS10290 WP_106081302.1 2040034..2040321(+) (abrB) [Bacillus cereus strain CDHWZ7]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTACAATTCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526