Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MYW48_RS06210 Genome accession   NZ_CP095767
Coordinates   1223712..1224035 (-) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus cereus strain CDHWZ7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218712..1229035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYW48_RS06185 (MYW48_06185) - 1218966..1220252 (+) 1287 WP_000247022.1 D-alanyl-D-alanine carboxypeptidase family protein -
  MYW48_RS06190 (MYW48_06190) - 1220448..1221017 (+) 570 WP_247727776.1 signal peptidase I -
  MYW48_RS06195 (MYW48_06195) - 1221078..1221665 (+) 588 WP_000172852.1 CalY family protein -
  MYW48_RS06200 (MYW48_06200) - 1221800..1222660 (+) 861 WP_142398762.1 DUF4047 domain-containing protein -
  MYW48_RS06205 (MYW48_06205) calY 1223046..1223639 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  MYW48_RS06210 (MYW48_06210) sinR 1223712..1224035 (-) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  MYW48_RS06215 (MYW48_06215) - 1224115..1224249 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  MYW48_RS06220 (MYW48_06220) inhA1 1224592..1226979 (+) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  MYW48_RS06225 (MYW48_06225) - 1227151..1228518 (+) 1368 WP_106081451.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=678293 MYW48_RS06210 WP_000578875.1 1223712..1224035(-) (sinR) [Bacillus cereus strain CDHWZ7]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=678293 MYW48_RS06210 WP_000578875.1 1223712..1224035(-) (sinR) [Bacillus cereus strain CDHWZ7]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692