Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MYW48_RS00220 Genome accession   NZ_CP095767
Coordinates   40488..40772 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain CDHWZ7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35488..45772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYW48_RS00185 (MYW48_00185) tmk 35680..36306 (+) 627 WP_000677218.1 dTMP kinase -
  MYW48_RS00190 (MYW48_00190) holB 36342..37325 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  MYW48_RS00195 (MYW48_00195) - 37331..38158 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  MYW48_RS00200 (MYW48_00200) yabA 38173..38523 (+) 351 WP_000412064.1 DNA replication initiation control protein YabA -
  MYW48_RS00205 (MYW48_00205) - 38606..39346 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MYW48_RS00210 (MYW48_00210) - 39333..39623 (+) 291 WP_000414353.1 GIY-YIG nuclease family protein -
  MYW48_RS00215 (MYW48_00215) rsmI 39592..40467 (+) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MYW48_RS00220 (MYW48_00220) abrB 40488..40772 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MYW48_RS00225 (MYW48_00225) metG 41232..43241 (+) 2010 WP_003255999.1 methionine--tRNA ligase -
  MYW48_RS00230 (MYW48_00230) - 43408..44175 (+) 768 WP_247727700.1 TatD family hydrolase -
  MYW48_RS00235 (MYW48_00235) rnmV 44391..44948 (+) 558 WP_000692842.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=678277 MYW48_RS00220 WP_000843036.1 40488..40772(-) (abrB) [Bacillus cereus strain CDHWZ7]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=678277 MYW48_RS00220 WP_000843036.1 40488..40772(-) (abrB) [Bacillus cereus strain CDHWZ7]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851