Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MYA94_RS16920 Genome accession   NZ_CP095762
Coordinates   3395305..3395901 (-) Length   198 a.a.
NCBI ID   WP_065809662.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain KP5362     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3390305..3400901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA94_RS16905 (MYA94_16905) helD 3390513..3392567 (-) 2055 WP_247722217.1 DNA helicase IV -
  MYA94_RS16910 (MYA94_16910) - 3392692..3393138 (+) 447 WP_002898425.1 YccF domain-containing protein -
  MYA94_RS16915 (MYA94_16915) yccS 3393156..3395291 (+) 2136 WP_002898422.1 YccS family putative transporter -
  MYA94_RS16920 (MYA94_16920) sxy/tfoX 3395305..3395901 (-) 597 WP_065809662.1 TfoX/Sxy family DNA transformation protein Regulator
  MYA94_RS16925 (MYA94_16925) sulA 3396250..3396759 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  MYA94_RS16930 (MYA94_16930) ompA 3397112..3398182 (+) 1071 WP_002898408.1 porin OmpA -
  MYA94_RS16935 (MYA94_16935) matP 3398314..3398766 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  MYA94_RS16940 (MYA94_16940) - 3398952..3400709 (+) 1758 WP_004191101.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22550.13 Da        Isoelectric Point: 10.0350

>NTDB_id=678246 MYA94_RS16920 WP_065809662.1 3395305..3395901(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP5362]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELFEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=678246 MYA94_RS16920 WP_065809662.1 3395305..3395901(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP5362]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTTTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.795

98.485

0.51