Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NALG_RS05450 Genome accession   NZ_AP017373
Coordinates   1119283..1120074 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus formosensis strain 122061     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114283..1125074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NALG_RS05430 (NALG_1118) - 1114557..1115912 (+) 1356 WP_096368839.1 MATE family efflux transporter -
  NALG_RS05435 (NALG_1119) gatB 1115926..1117359 (-) 1434 WP_096368840.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  NALG_RS05440 (NALG_1120) gatA 1117361..1118833 (-) 1473 WP_096368841.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  NALG_RS05445 (NALG_1121) gatC 1118833..1119138 (-) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NALG_RS05450 (NALG_1122) codY 1119283..1120074 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NALG_RS05455 (NALG_1123) - 1120211..1121818 (-) 1608 WP_096368842.1 glycosyltransferase -
  NALG_RS05460 (NALG_1124) - 1121958..1122287 (-) 330 WP_096368843.1 DUF1292 domain-containing protein -
  NALG_RS05465 (NALG_1125) ruvX 1122302..1122730 (-) 429 WP_017368693.1 Holliday junction resolvase RuvX -
  NALG_RS05470 (NALG_1126) - 1122730..1122996 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  NALG_RS05475 (NALG_1127) - 1123175..1124086 (-) 912 WP_096368844.1 aldo/keto reductase -
  NALG_RS05480 (NALG_1128) rpmH 1124237..1124371 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=67819 NALG_RS05450 WP_003133634.1 1119283..1120074(-) (codY) [Lactococcus formosensis strain 122061]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=67819 NALG_RS05450 WP_003133634.1 1119283..1120074(-) (codY) [Lactococcus formosensis strain 122061]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATTATTGATACAAAAGGGAAGCTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGTTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTACTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACAATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483

Multiple sequence alignment