Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OG234_RS07635 Genome accession   NZ_CP109513
Coordinates   1781546..1783633 (+) Length   695 a.a.
NCBI ID   WP_405758456.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1776546..1788633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG234_RS07610 (OG234_07625) - 1776819..1777751 (+) 933 WP_330451980.1 ABC transporter ATP-binding protein -
  OG234_RS07615 (OG234_07630) - 1777748..1778515 (+) 768 WP_073864703.1 ABC transporter permease -
  OG234_RS07620 (OG234_07635) - 1778591..1779604 (+) 1014 WP_405758448.1 COX15/CtaA family protein -
  OG234_RS07625 (OG234_07640) - 1779688..1780053 (-) 366 WP_405758451.1 hypothetical protein -
  OG234_RS07630 (OG234_07645) - 1780146..1781093 (-) 948 WP_405758454.1 heme o synthase -
  OG234_RS07635 (OG234_07650) recP/tkt 1781546..1783633 (+) 2088 WP_405758456.1 transketolase Machinery gene
  OG234_RS07640 (OG234_07655) tal 1783668..1784786 (+) 1119 WP_132902314.1 transaldolase -
  OG234_RS07645 (OG234_07660) zwf 1784792..1786324 (+) 1533 WP_018518823.1 glucose-6-phosphate dehydrogenase -
  OG234_RS07650 (OG234_07665) opcA 1786321..1787334 (+) 1014 WP_330451982.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OG234_RS07655 (OG234_07670) pgl 1787376..1788116 (+) 741 WP_405763579.1 6-phosphogluconolactonase -
  OG234_RS07660 (OG234_07675) - 1788246..1788602 (+) 357 WP_402327984.1 VOC family protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74683.54 Da        Isoelectric Point: 4.9568

>NTDB_id=678162 OG234_RS07635 WP_405758456.1 1781546..1783633(+) (recP/tkt) [Streptomyces sp. NBC_01420]
MSTKPTTTDLQWTELDQRAVDTVRVLAADAVQKVGNGHPGTAMSLAPAAYTIFQKVMRHDPADAEWTGRDRFVLSAGHSS
LTLYIQLYLAGYGLELDDLKSFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAPGTSPF
DHMVWVVAGDGCLQEGISAEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTVKRYEAYGWHVQRVDQLPNGDLDP
EGLYNALLAAKAETERPSFIAARSIIAWPAPHAQNTEASHGSALGDDEVAATKKVLGFDPEKSFEVSDEVIAHTRAALDR
GREAKAEWQKGFDAWRAGNPERAADFDRIAAGELPKGWEDSLPVFETGKGVATRAASGKVLQALGGIIPELWGGSADLAG
SNNTTIDKTSSFLPAGNPLPEADPYGRTIHFGIREHAMAAAMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREILRRYTKVFGKGAPHGLALTRQGVPTYEANE
DAAKGGYVLFDAEGGEPQVVLIGTGSEVQLAVEAREELQAAGIPTRVVSMPCVEWFEEQEQGYKDSVLPPSVKARVTVEA
GIGLTWYRYVGDAGRIVSLEHFGASADAKVLFREFGFTGEHVAEAARESLAAATR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=678162 OG234_RS07635 WP_405758456.1 1781546..1783633(+) (recP/tkt) [Streptomyces sp. NBC_01420]
GTGAGCACCAAGCCGACCACCACAGACCTCCAGTGGACCGAATTGGACCAGCGGGCCGTGGACACCGTCCGCGTCCTCGC
CGCGGACGCCGTACAGAAAGTCGGAAACGGCCACCCGGGTACGGCCATGAGCCTGGCTCCCGCCGCGTACACCATCTTCC
AGAAGGTGATGCGGCACGACCCCGCGGACGCGGAGTGGACCGGCCGCGACCGGTTCGTGCTCTCGGCGGGCCACAGCAGC
CTGACCCTGTACATCCAGCTCTACCTGGCCGGCTACGGCCTGGAGCTCGATGACCTGAAGTCGTTCCGCACCTGGGGCTC
CAAGACCCCGGGGCACCCCGAGTACGGCCACACCACCGGTGTGGAGACGACGACCGGCCCGCTGGGCCAGGGTGTCGCCA
ACGCGGTGGGCATGGCCATGGCCGCCCGCTACGAGCGCGGTCTGTTCGACCCGGAGGCCGCCCCCGGCACCTCCCCCTTC
GACCACATGGTGTGGGTCGTCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCGGCCGAGGCGTCCTCGCTGGCCGGCCA
CCAGAAGCTCGGCAACCTGGTCCTGCTGTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACCGCGGTCTCCG
AGGACACCGTCAAGCGCTACGAGGCGTACGGCTGGCACGTCCAGCGCGTCGACCAGCTGCCCAACGGCGACCTGGACCCC
GAGGGCCTCTACAACGCGCTGCTGGCCGCCAAGGCCGAGACCGAGCGCCCGTCGTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCCGCCCCGCACGCCCAGAACACCGAGGCCTCGCACGGCTCGGCGCTCGGCGACGACGAGGTCGCCGCGACCAAGA
AGGTGCTCGGCTTCGACCCGGAGAAGAGCTTCGAGGTCTCCGACGAGGTCATCGCGCACACCCGCGCCGCCCTGGACCGC
GGCCGCGAGGCCAAGGCCGAGTGGCAGAAGGGCTTCGACGCCTGGCGCGCCGGCAACCCGGAGCGCGCCGCCGACTTCGA
CCGCATCGCCGCGGGCGAGCTGCCCAAGGGCTGGGAGGACAGCCTCCCGGTCTTCGAGACCGGCAAGGGCGTCGCCACCC
GCGCCGCGTCCGGCAAGGTGCTCCAGGCGCTCGGCGGGATCATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTGGCCGGC
TCGAACAACACCACGATCGACAAGACGTCGTCGTTCCTGCCGGCGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
CACGATCCACTTCGGCATCCGCGAGCACGCCATGGCCGCCGCGATGAACGGCATCGCGCTGCACGGCAACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTGCGCCTGTCCGCGCTGATGCACCTGCCGGTGACC
TACGTGTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTGGAGCACCTGGCCTCGCTGCG
CGCCATCCCGGGCCTCAACGTCGTGCGCCCGGCCGACGCCAACGAGACCGCCATCGCCTGGCGCGAGATCCTGCGCCGCT
ACACCAAGGTGTTCGGCAAGGGCGCCCCGCACGGTCTGGCGCTGACCCGCCAGGGCGTGCCGACGTACGAGGCGAACGAG
GACGCGGCCAAGGGCGGCTACGTGCTCTTCGACGCCGAGGGTGGCGAGCCGCAGGTCGTGCTGATCGGCACGGGCTCCGA
GGTCCAGCTCGCCGTCGAGGCGCGCGAGGAGCTCCAGGCGGCCGGAATTCCGACCCGTGTGGTGTCGATGCCGTGTGTCG
AGTGGTTCGAGGAGCAGGAACAGGGTTACAAGGACAGCGTTCTGCCGCCGTCGGTCAAGGCCCGTGTGACCGTGGAGGCG
GGCATCGGCCTGACCTGGTACCGGTACGTCGGCGACGCCGGCCGGATCGTGTCGCTGGAGCACTTCGGCGCTTCGGCGGA
CGCCAAGGTCCTGTTCCGGGAGTTCGGCTTCACCGGCGAGCACGTCGCCGAGGCCGCCCGGGAATCCCTCGCCGCCGCCA
CGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

43.51

97.554

0.424