Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG234_RS03930 Genome accession   NZ_CP109513
Coordinates   951190..951825 (+) Length   211 a.a.
NCBI ID   WP_405757588.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01420     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 946190..956825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG234_RS03905 (OG234_03905) - 947160..947891 (+) 732 WP_405757578.1 lysophospholipid acyltransferase family protein -
  OG234_RS03910 (OG234_03910) - 947938..948987 (+) 1050 WP_405757581.1 NAD-dependent epimerase/dehydratase family protein -
  OG234_RS03915 (OG234_03915) - 949004..949633 (-) 630 WP_329023037.1 TetR/AcrR family transcriptional regulator -
  OG234_RS03920 (OG234_03920) - 949742..950734 (+) 993 WP_405757583.1 ABC transporter permease -
  OG234_RS03925 (OG234_03925) - 950809..951093 (-) 285 WP_405757585.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  OG234_RS03930 (OG234_03930) clpP 951190..951825 (+) 636 WP_405757588.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG234_RS03935 (OG234_03935) - 951833..952141 (+) 309 WP_093710866.1 hypothetical protein -
  OG234_RS03940 (OG234_03940) - 952647..953120 (+) 474 WP_329023043.1 C40 family peptidase -
  OG234_RS03945 (OG234_03945) - 953138..953569 (-) 432 WP_329023045.1 ATP-binding protein -
  OG234_RS03950 (OG234_03950) - 953774..954634 (+) 861 WP_093709906.1 helix-turn-helix transcriptional regulator -
  OG234_RS03955 (OG234_03955) - 954660..954857 (+) 198 WP_026242933.1 DUF397 domain-containing protein -
  OG234_RS03960 (OG234_03960) - 954871..956013 (-) 1143 WP_405757592.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22743.86 Da        Isoelectric Point: 5.2958

>NTDB_id=678154 OG234_RS03930 WP_405757588.1 951190..951825(+) (clpP) [Streptomyces sp. NBC_01420]
MHRPVVARHVLPEFTERTSRGSRTLDPYSKLLGDRIVFLGTALDETAANDLVAQLMYLEYDAPDRPVSLYINSPGGSFGA
MTALYDTMAFLSCEVETYCLGRAGAGAAVLLAAGAPGRRHMLPGATVVLSQPALDEPVQGQPSDLEIEARELARMRGTMT
GMLARHTGRSVEQITEDTERDLVLDAEGAVAHGIVDHVVRSRVPAPPYSAR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=678154 OG234_RS03930 WP_405757588.1 951190..951825(+) (clpP) [Streptomyces sp. NBC_01420]
GTGCACCGTCCCGTCGTCGCCCGTCACGTCCTGCCCGAGTTCACCGAGCGCACCTCCCGGGGATCCCGAACCCTCGACCC
GTACTCCAAGCTGCTGGGCGACCGCATCGTCTTCCTCGGTACGGCCCTCGACGAGACGGCCGCCAACGACCTGGTGGCCC
AGCTGATGTACCTGGAGTACGACGCGCCGGACCGGCCCGTCTCGCTGTACATCAACTCGCCGGGCGGCTCGTTCGGCGCG
ATGACGGCCCTCTACGACACGATGGCGTTCCTCAGCTGCGAGGTGGAGACCTACTGCCTGGGCCGGGCGGGGGCCGGCGC
GGCCGTGCTGCTCGCCGCGGGCGCTCCGGGGCGGCGGCACATGCTGCCGGGCGCCACCGTGGTGCTGAGCCAGCCCGCGT
TGGACGAGCCGGTGCAGGGCCAGCCGTCCGACCTGGAGATCGAGGCGCGGGAACTGGCCCGGATGCGCGGGACCATGACC
GGCATGCTGGCCCGGCACACGGGGCGCTCCGTCGAGCAGATCACCGAGGACACCGAGCGCGACCTGGTCCTGGACGCGGA
AGGGGCCGTGGCCCACGGGATCGTCGACCATGTCGTGCGGAGCCGCGTCCCGGCGCCGCCGTACTCCGCTCGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

42.932

90.521

0.389