Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MXH81_RS11645 Genome accession   NZ_CP095759
Coordinates   2308319..2309089 (-) Length   256 a.a.
NCBI ID   WP_197172661.1    Uniprot ID   -
Organism   Bacillus safensis strain ZK-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2303319..2314089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXH81_RS11625 (MXH81_11625) - 2303411..2304232 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MXH81_RS11630 (MXH81_11630) - 2304258..2304896 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MXH81_RS11635 (MXH81_11635) glyS 2305064..2307109 (-) 2046 WP_024423018.1 glycine--tRNA ligase subunit beta -
  MXH81_RS11640 (MXH81_11640) glyQ 2307102..2307989 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  MXH81_RS11645 (MXH81_11645) recO 2308319..2309089 (-) 771 WP_197172661.1 DNA repair protein RecO Machinery gene
  MXH81_RS11650 (MXH81_11650) - 2309125..2309268 (-) 144 WP_003217288.1 YqzL family protein -
  MXH81_RS11655 (MXH81_11655) era 2309417..2310322 (-) 906 WP_007501305.1 GTPase Era -
  MXH81_RS11660 (MXH81_11660) - 2310315..2310713 (-) 399 WP_008356263.1 cytidine deaminase -
  MXH81_RS11665 (MXH81_11665) - 2310827..2311213 (-) 387 WP_073206342.1 diacylglycerol kinase family protein -
  MXH81_RS11670 (MXH81_11670) ybeY 2311191..2311670 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  MXH81_RS11675 (MXH81_11675) - 2311671..2313758 (-) 2088 WP_172881095.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29337.98 Da        Isoelectric Point: 8.1204

>NTDB_id=678109 MXH81_RS11645 WP_197172661.1 2308319..2309089(-) (recO) [Bacillus safensis strain ZK-1]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMSDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=678109 MXH81_RS11645 WP_197172661.1 2308319..2309089(-) (recO) [Bacillus safensis strain ZK-1]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGTGTGATGGCCAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTAATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGATGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGAGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75

100

0.75