Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MXH81_RS11315 Genome accession   NZ_CP095759
Coordinates   2252537..2252872 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain ZK-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2247537..2257872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXH81_RS11295 (MXH81_11295) gcvT 2248016..2249113 (-) 1098 WP_247721556.1 glycine cleavage system aminomethyltransferase GcvT -
  MXH81_RS11300 (MXH81_11300) - 2249675..2251345 (+) 1671 WP_133744192.1 SNF2-related protein -
  MXH81_RS11305 (MXH81_11305) - 2251360..2252157 (+) 798 WP_198456924.1 YqhG family protein -
  MXH81_RS11310 (MXH81_11310) - 2252339..2252503 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  MXH81_RS11315 (MXH81_11315) sinR 2252537..2252872 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  MXH81_RS11320 (MXH81_11320) - 2252940..2253740 (-) 801 WP_024422970.1 TasA family protein -
  MXH81_RS11325 (MXH81_11325) - 2253795..2254367 (-) 573 WP_025092977.1 signal peptidase I -
  MXH81_RS11330 (MXH81_11330) tapA 2254420..2254947 (-) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  MXH81_RS11335 (MXH81_11335) - 2255247..2255525 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  MXH81_RS11340 (MXH81_11340) - 2255558..2255752 (-) 195 WP_056767455.1 YqzE family protein -
  MXH81_RS11345 (MXH81_11345) comGG 2255812..2256195 (-) 384 WP_247721557.1 competence type IV pilus minor pilin ComGG -
  MXH81_RS11350 (MXH81_11350) comGF 2256192..2256719 (-) 528 WP_258011119.1 competence type IV pilus minor pilin ComGF -
  MXH81_RS11355 (MXH81_11355) comGE 2256631..2256945 (-) 315 WP_073206282.1 competence type IV pilus minor pilin ComGE -
  MXH81_RS11360 (MXH81_11360) comGD 2256929..2257375 (-) 447 WP_185853687.1 competence type IV pilus minor pilin ComGD -
  MXH81_RS11365 (MXH81_11365) comGC 2257368..2257661 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=678106 MXH81_RS11315 WP_024422969.1 2252537..2252872(+) (sinR) [Bacillus safensis strain ZK-1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=678106 MXH81_RS11315 WP_024422969.1 2252537..2252872(+) (sinR) [Bacillus safensis strain ZK-1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946