Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MXH81_RS00020 Genome accession   NZ_CP095759
Coordinates   3153..4265 (+) Length   370 a.a.
NCBI ID   WP_044333186.1    Uniprot ID   -
Organism   Bacillus safensis strain ZK-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXH81_RS00005 (MXH81_00005) dnaA 97..1437 (+) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  MXH81_RS00010 (MXH81_00010) dnaN 1634..2770 (+) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  MXH81_RS00015 (MXH81_00015) yaaA 2921..3136 (+) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  MXH81_RS00020 (MXH81_00020) recF 3153..4265 (+) 1113 WP_044333186.1 DNA replication/repair protein RecF Machinery gene
  MXH81_RS00025 (MXH81_00025) - 4283..4528 (+) 246 WP_024424076.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  MXH81_RS00030 (MXH81_00030) gyrB 4586..6502 (+) 1917 WP_024424077.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MXH81_RS00035 (MXH81_00035) gyrA 6735..9239 (+) 2505 WP_024424078.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42559.64 Da        Isoelectric Point: 7.3662

>NTDB_id=678073 MXH81_RS00020 WP_044333186.1 3153..4265(+) (recF) [Bacillus safensis strain ZK-1]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=678073 MXH81_RS00020 WP_044333186.1 3153..4265(+) (recF) [Bacillus safensis strain ZK-1]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACTGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTTACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACCCTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGGACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832