Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   L8T27_RS25880 Genome accession   NZ_CP095744
Coordinates   1275406..1277202 (+) Length   598 a.a.
NCBI ID   WP_237944213.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270406..1282202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS25865 (L8T27_025860) - 1271177..1271680 (+) 504 WP_237943994.1 helix-turn-helix domain-containing protein -
  L8T27_RS25870 (L8T27_025865) cls 1271877..1273328 (+) 1452 WP_237943996.1 cardiolipin synthase -
  L8T27_RS25875 (L8T27_025870) rcrP 1273617..1275374 (+) 1758 WP_237943998.1 ABC transporter ATP-binding protein Regulator
  L8T27_RS25880 (L8T27_025875) rcrQ 1275406..1277202 (+) 1797 WP_237944213.1 ABC transporter ATP-binding protein Regulator
  L8T27_RS25885 (L8T27_025880) - 1277278..1278162 (-) 885 WP_237944000.1 hypothetical protein -
  L8T27_RS25890 (L8T27_025885) - 1278152..1278619 (-) 468 WP_233315585.1 flavodoxin domain-containing protein -
  L8T27_RS25895 (L8T27_025890) - 1278891..1279211 (+) 321 WP_233315584.1 PadR family transcriptional regulator -
  L8T27_RS25900 (L8T27_025895) - 1279204..1279803 (+) 600 WP_237944002.1 DUF1700 domain-containing protein -
  L8T27_RS25905 (L8T27_025900) - 1279804..1280769 (+) 966 WP_237944004.1 DUF4097 family beta strand repeat-containing protein -
  L8T27_RS25910 (L8T27_025905) - 1280925..1281302 (+) 378 WP_233315581.1 VOC family protein -
  L8T27_RS25915 (L8T27_025910) - 1281378..1281824 (+) 447 WP_237944006.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 66029.16 Da        Isoelectric Point: 4.7829

>NTDB_id=678065 L8T27_RS25880 WP_237944213.1 1275406..1277202(+) (rcrQ) [Niallia sp. Man26]
MEPDKQPKDANIQSTQKGMNIKSLNELASYSKAYFPAIIIALILAMAAAIFSIVGPNQLSKMTDLITEGLVGSIDMDAVF
DVAILLVFLYGVGFIFNYIQGYIMATVTQRVSKQLRHDISEKINRLPLKYFDSTTTGDVLSRVTNDVDMVGQTMNQSISG
LITAITMFVGSLIMMFYTNWIMAISAVLSTVVGFVLMVFIISKSQTYFAQQQADLGKLNGHIEETYSGHNVVKAYNGEKQ
AQNDFSVINTRLYDSAWKSQFMSGLMMPLMMFIGNFGYVVVCIVGAALAVNGTISFGVIVAFMLYIRLFTQPLQQLAQAA
TNLQSTAAASGRVFEFLGEEELAKESNKLEKLENVNGNVEFKHVQFGYDEDKLIIKDFSVKVAAGQKVAIVGPTGAGKTT
LINLLMRFYELNGGEITIDGISTNQMTRECLHDLFCMVLQDTWVFEGSIRDNIVYSRDDVSNQEVEAACKAVGLDHFIKT
LPDKYDTILNDKSSLSAGQKQLITIARAMVKMAPLLILDEATSSVDTRTEVLIQQAMDKLTEGKTSFVIAHRLSTIKNAD
LILVMKDGDIIEAGNHQELISQDGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=678065 L8T27_RS25880 WP_237944213.1 1275406..1277202(+) (rcrQ) [Niallia sp. Man26]
ATGGAACCAGATAAACAACCAAAAGATGCTAACATTCAGAGCACGCAAAAAGGCATGAATATAAAAAGCCTAAATGAGCT
TGCCTCGTATTCGAAGGCTTACTTCCCAGCAATAATTATTGCCTTAATTCTTGCTATGGCGGCTGCCATCTTTAGTATCG
TTGGCCCTAATCAGCTAAGCAAGATGACAGATCTTATCACAGAAGGTTTAGTGGGCAGTATTGATATGGACGCTGTTTTC
GATGTTGCTATTTTACTTGTGTTTTTGTATGGCGTAGGATTCATTTTCAACTATATCCAAGGCTATATTATGGCGACTGT
TACACAAAGAGTTTCTAAGCAATTAAGACATGATATTTCCGAGAAAATAAATCGTCTTCCCTTGAAGTATTTTGATTCGA
CTACAACAGGAGATGTGTTAAGCAGAGTAACTAATGATGTAGATATGGTCGGTCAAACGATGAACCAAAGCATCAGTGGT
TTAATTACAGCCATTACTATGTTTGTAGGATCATTAATTATGATGTTTTACACAAACTGGATTATGGCAATTTCAGCTGT
GCTTTCAACCGTAGTTGGGTTTGTATTGATGGTCTTTATCATATCAAAATCTCAAACCTACTTTGCACAGCAGCAAGCAG
ACCTAGGTAAGCTCAATGGTCATATTGAGGAGACTTATTCAGGGCATAATGTGGTAAAGGCATATAATGGCGAAAAACAA
GCGCAGAATGATTTTTCTGTCATTAACACAAGATTATATGATAGTGCATGGAAATCTCAATTCATGTCAGGTCTTATGAT
GCCACTCATGATGTTCATCGGAAACTTTGGATATGTAGTCGTTTGTATTGTTGGGGCTGCCCTTGCAGTAAATGGCACGA
TCTCCTTTGGTGTAATTGTTGCGTTTATGCTTTATATTCGGCTATTTACACAACCGCTTCAACAGCTGGCCCAAGCAGCC
ACTAATTTACAGTCTACTGCGGCAGCGAGTGGACGAGTCTTTGAATTTTTAGGAGAGGAAGAGCTTGCGAAAGAAAGCAA
CAAATTAGAAAAGTTAGAAAATGTTAATGGAAATGTGGAATTTAAGCATGTGCAATTTGGTTATGACGAAGATAAGTTAA
TTATTAAGGATTTTTCTGTAAAGGTGGCAGCAGGGCAAAAAGTTGCTATTGTAGGGCCAACAGGTGCGGGAAAAACAACG
CTAATCAACTTACTGATGCGATTTTATGAATTAAATGGCGGAGAAATCACGATTGACGGCATTTCGACTAATCAAATGAC
AAGAGAGTGTTTGCATGATCTGTTCTGTATGGTGCTTCAAGATACATGGGTGTTTGAGGGGTCTATTCGCGATAATATTG
TTTATTCAAGGGATGATGTATCAAATCAAGAGGTAGAAGCAGCCTGCAAAGCAGTAGGGCTAGATCACTTTATTAAAACA
TTGCCTGATAAATATGATACGATTTTAAATGACAAGTCAAGTTTATCTGCAGGACAAAAGCAGCTGATTACCATTGCCCG
GGCTATGGTGAAAATGGCGCCATTACTTATTCTCGATGAAGCAACAAGCTCAGTCGATACGCGCACAGAGGTGCTTATCC
AGCAAGCAATGGATAAACTAACGGAAGGAAAAACATCCTTTGTTATCGCGCACAGATTGTCTACGATAAAAAATGCCGAT
TTGATTTTAGTAATGAAAGATGGCGATATTATCGAAGCTGGTAACCATCAAGAATTAATCAGCCAAGACGGCTTCTATGC
AGAACTATATAATAGCCAATTTGAAGAGGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(376-523)

ABC transporter transmembrane region (ABC_membrane)

(38-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.894

95.819

0.545