Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   L8T27_RS25875 Genome accession   NZ_CP095744
Coordinates   1273617..1275374 (+) Length   585 a.a.
NCBI ID   WP_237943998.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268617..1280374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS25855 (L8T27_025850) - 1268945..1270027 (+) 1083 WP_237943993.1 transposase -
  L8T27_RS25860 (L8T27_025855) - 1270190..1270864 (+) 675 WP_237944212.1 NAD(P)H-dependent oxidoreductase -
  L8T27_RS25865 (L8T27_025860) - 1271177..1271680 (+) 504 WP_237943994.1 helix-turn-helix domain-containing protein -
  L8T27_RS25870 (L8T27_025865) cls 1271877..1273328 (+) 1452 WP_237943996.1 cardiolipin synthase -
  L8T27_RS25875 (L8T27_025870) rcrP 1273617..1275374 (+) 1758 WP_237943998.1 ABC transporter ATP-binding protein Regulator
  L8T27_RS25880 (L8T27_025875) rcrQ 1275406..1277202 (+) 1797 WP_237944213.1 ABC transporter ATP-binding protein Regulator
  L8T27_RS25885 (L8T27_025880) - 1277278..1278162 (-) 885 WP_237944000.1 hypothetical protein -
  L8T27_RS25890 (L8T27_025885) - 1278152..1278619 (-) 468 WP_233315585.1 flavodoxin domain-containing protein -
  L8T27_RS25895 (L8T27_025890) - 1278891..1279211 (+) 321 WP_233315584.1 PadR family transcriptional regulator -
  L8T27_RS25900 (L8T27_025895) - 1279204..1279803 (+) 600 WP_237944002.1 DUF1700 domain-containing protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64821.60 Da        Isoelectric Point: 6.5250

>NTDB_id=678064 L8T27_RS25875 WP_237943998.1 1273617..1275374(+) (rcrP) [Niallia sp. Man26]
MLKIFSHFQRKDWLLITCALVFIVMQVWLDLKLPDYMSEITRLVQTEGSEISDVLSQGGFMLLCAVGSMAASIITVYFAA
KVAARFSNRLRGMVFDKTLSFSMQELSSFSTASLITRSTNDIMQVQMLIILGLQVVLKAPILAVWAILKIMGKSWQWTAA
TGVAVFVLLVLIAIIVLIALPKFKVIQTLTDNLNMVTRENLTGIRVVHAYNSTKFHQSKFEKANNDLTDTNLFTTRTMAI
LMPTISLIMSGISLAIYWIGAVLINDAPMTNKLTIFSDMVVFSSYAMQIIMAFMMVSITFVLLPRAAVSAKRINEVLDTE
VSIKDGTATEGTTEAEIEFRNVSFKYPGASEYVLQNVSFKASKGETLAIIGSTGSGKSTLVNLIPRFMEATEGEILVDGL
NVKEYNLESLRDKLGYVSQKAVMFSGSVSSNIAFGEADKSTKAESEIKRAVEIAQGKDFIEKMDQQYEAAISQGGTNLSG
GQKQRLSIARAIYKLPEIYLFDDSFSALDYKTDRVLRSKLKQEIKDATSIIIAQRIGTIKDADRILVLDEGKIVGIGRHD
ELMQTCDVYQEIAYSQLSKEELEIG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=678064 L8T27_RS25875 WP_237943998.1 1273617..1275374(+) (rcrP) [Niallia sp. Man26]
ATGTTAAAAATATTTAGCCACTTTCAAAGAAAAGATTGGCTGTTAATTACATGTGCGTTAGTATTCATTGTTATGCAAGT
CTGGCTTGATCTGAAGCTTCCGGATTATATGTCGGAAATTACTAGGCTTGTTCAAACAGAGGGAAGTGAAATTAGTGATG
TTCTTTCCCAAGGCGGATTTATGCTGCTGTGTGCGGTGGGAAGTATGGCCGCTTCCATCATCACTGTGTATTTTGCCGCA
AAAGTAGCAGCGAGATTTTCAAACAGATTAAGGGGAATGGTGTTTGATAAAACCTTATCCTTCTCGATGCAGGAGCTTTC
TAGTTTTTCTACGGCAAGTTTAATTACTCGTTCCACAAATGATATTATGCAGGTTCAAATGCTCATCATACTTGGGTTGC
AAGTTGTTTTGAAAGCCCCGATACTTGCGGTTTGGGCTATTTTAAAGATTATGGGGAAATCTTGGCAGTGGACTGCCGCG
ACTGGAGTCGCTGTGTTCGTACTATTGGTGTTAATTGCTATCATAGTTTTAATCGCATTACCTAAATTCAAAGTTATTCA
AACATTAACAGATAATTTAAACATGGTTACAAGAGAAAATTTAACGGGAATACGTGTTGTTCATGCCTACAATTCTACTA
AGTTCCATCAAAGTAAATTTGAAAAAGCGAACAACGATTTAACAGACACAAACCTGTTTACAACGAGAACGATGGCCATA
TTAATGCCGACAATTTCGCTTATTATGTCCGGAATCAGTCTTGCGATTTATTGGATTGGCGCCGTATTAATAAATGATGC
GCCAATGACAAATAAACTGACGATATTCTCTGATATGGTCGTATTTTCTTCTTATGCGATGCAGATAATTATGGCATTTA
TGATGGTTTCCATTACTTTTGTTTTGCTGCCTCGTGCAGCTGTTTCTGCAAAGAGGATAAATGAAGTTCTCGATACGGAA
GTCAGCATTAAGGATGGAACAGCAACAGAAGGAACTACAGAAGCAGAAATTGAATTTCGAAATGTCAGCTTTAAATACCC
TGGGGCATCTGAATATGTTTTACAGAATGTAAGTTTCAAAGCGTCTAAGGGAGAAACGCTTGCTATTATCGGTTCTACAG
GCAGCGGAAAGAGTACCCTTGTTAACTTGATTCCTCGTTTTATGGAAGCAACAGAAGGCGAAATTCTTGTGGATGGTCTT
AATGTAAAAGAATATAATTTAGAATCGTTAAGAGATAAATTAGGCTATGTATCCCAAAAGGCGGTTATGTTCAGCGGGTC
CGTTTCTTCCAATATTGCTTTTGGTGAAGCAGACAAAAGCACAAAAGCTGAAAGCGAAATAAAGAGAGCCGTAGAGATAG
CGCAAGGAAAAGACTTTATTGAAAAAATGGATCAGCAATACGAGGCAGCTATTTCACAAGGTGGTACCAATCTCTCAGGT
GGTCAGAAGCAAAGACTATCCATTGCACGTGCCATCTATAAATTGCCTGAAATTTATCTATTCGATGATTCCTTTTCTGC
TTTAGATTATAAAACAGACCGTGTCCTCCGTTCTAAGTTAAAGCAGGAAATTAAGGATGCTACTTCCATTATTATTGCGC
AGAGAATCGGTACAATCAAAGACGCGGATCGCATTCTTGTCCTAGATGAAGGCAAAATAGTAGGAATTGGCAGACACGAT
GAATTAATGCAGACATGTGATGTATACCAAGAAATTGCTTATTCACAATTGTCAAAGGAGGAGCTTGAAATTGGATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(354-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.25

100

0.515