Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG290_RS25890 Genome accession   NZ_CP109506
Coordinates   5833170..5833964 (-) Length   264 a.a.
NCBI ID   WP_329029268.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01423     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5828170..5838964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG290_RS25875 (OG290_25910) - 5828371..5829117 (+) 747 WP_329030819.1 GNAT family N-acetyltransferase -
  OG290_RS25880 (OG290_25915) - 5829178..5831034 (+) 1857 WP_329029266.1 IucA/IucC family siderophore biosynthesis protein -
  OG290_RS25885 (OG290_25920) - 5831085..5833055 (+) 1971 WP_329029267.1 ATP-dependent DNA helicase -
  OG290_RS25890 (OG290_25925) dinR/lexA 5833170..5833964 (-) 795 WP_329029268.1 transcriptional repressor LexA Regulator
  OG290_RS25895 (OG290_25930) nrdR 5834472..5834984 (+) 513 WP_018520799.1 transcriptional regulator NrdR -
  OG290_RS25900 (OG290_25935) - 5835149..5838052 (+) 2904 WP_329029269.1 vitamin B12-dependent ribonucleotide reductase -
  OG290_RS25905 (OG290_25940) - 5838119..5838655 (-) 537 WP_132903973.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28623.37 Da        Isoelectric Point: 6.9854

>NTDB_id=678059 OG290_RS25890 WP_329029268.1 5833170..5833964(-) (dinR/lexA) [Streptomyces sp. NBC_01423]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGQEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=678059 OG290_RS25890 WP_329029268.1 5833170..5833964(-) (dinR/lexA) [Streptomyces sp. NBC_01423]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGCCAGGAGCCCGGGCGCCCAGCGCGCTCGCTCCCCGGACGACCTCCCGGAATCCGGG
CCGACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGCGGCTACCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTCTCCAGCACCTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTCCGCCGCGACCCGCACCGCCCCCGGGCCTACGAGGTGCGCGGCTCCGACCAGCCGAGCACCCAGCCGA
CGGACACCACGGGCAAGCCCGCCGCCTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCAGGTGGGCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTCTTCGTGCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCGGCCATCTGTGACGGCGACTGGGTCACCGTCCGGCGCCAGCCCGTCGCGGAGAACGGGGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCCCACAAC
GCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371