Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L8T27_RS13030 Genome accession   NZ_CP095743
Coordinates   2573739..2575427 (-) Length   562 a.a.
NCBI ID   WP_233313216.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2568739..2580427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS13005 (L8T27_013010) - 2569010..2569330 (+) 321 WP_233313224.1 helix-turn-helix domain-containing protein -
  L8T27_RS13010 (L8T27_013015) - 2569514..2569951 (+) 438 WP_237941687.1 hypothetical protein -
  L8T27_RS13015 (L8T27_013020) spo0A 2570067..2570864 (-) 798 WP_233313221.1 sporulation transcription factor Spo0A -
  L8T27_RS13020 (L8T27_013025) - 2571284..2572201 (+) 918 WP_237941688.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  L8T27_RS13025 (L8T27_013030) spoIVB 2572236..2573528 (-) 1293 WP_233313218.1 SpoIVB peptidase -
  L8T27_RS13030 (L8T27_013035) recN 2573739..2575427 (-) 1689 WP_233313216.1 DNA repair protein RecN Machinery gene
  L8T27_RS13035 (L8T27_013040) argR 2575443..2575892 (-) 450 WP_233313215.1 transcriptional regulator ArgR -
  L8T27_RS13040 (L8T27_013045) - 2576149..2576970 (-) 822 WP_233313212.1 TlyA family RNA methyltransferase -
  L8T27_RS13045 (L8T27_013050) dxs 2576978..2578870 (-) 1893 WP_233313211.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L8T27_RS13050 (L8T27_013055) - 2579287..2580174 (-) 888 WP_233313210.1 polyprenyl synthetase family protein -
  L8T27_RS13055 (L8T27_013060) xseB 2580179..2580412 (-) 234 WP_233313209.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63286.17 Da        Isoelectric Point: 5.0405

>NTDB_id=678041 L8T27_RS13030 WP_233313216.1 2573739..2575427(-) (recN) [Niallia sp. Man26]
MLNELSIKNFAIIESLSVSFQKGLTVLTGETGAGKSIIIDAINLLVGGRGSAEFVRHGEEKAEIEGLFYIENGHPCFQKM
EEFGIDIEEGTIILRRDISVSGKSVCRINGKLITISTLREIGSSLIDIHGQHEHQELMDETKHLMLLDTYAHTELAPVLK
EYEALYRSYTQTQKKLMNLTENEQQMAHRLDLLTFQHQEIINANLQKNEDEELLEERKKLGNFERIFESIQTSYTALKGE
QKGLDWLGEVMGHMEEAASLDPEYKEIADSVSNSFYILEDVASRLRNSLDYLEYDPERLNSIESRLNEINSLKRKYGKSV
DEILEYAAKIEEELETLQNKETHIDMLEKELLSIKKDLLVEANELSSLRKKAALRLTEDIHQELKQLYMEKTVFEVRINA
DDDNVTKSGMDDVEFYISTNPGEPLKPLSKIVSGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKISK
VAAGSQVLCISHMPQVAAMADTHLYIAKAIHDGRTSTTVTPLAKQDKVKEIARMISGTEITDLTKKHAKELLKLAQKVKN
NG

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=678041 L8T27_RS13030 WP_233313216.1 2573739..2575427(-) (recN) [Niallia sp. Man26]
TTGCTTAATGAATTATCAATTAAAAATTTTGCCATAATAGAATCCTTATCCGTCTCCTTTCAAAAAGGATTGACCGTTCT
AACAGGGGAAACAGGTGCTGGGAAATCCATTATTATTGATGCGATAAATTTGCTTGTAGGCGGCAGGGGTTCTGCTGAAT
TTGTTCGCCATGGGGAAGAAAAGGCAGAAATAGAAGGGCTTTTTTATATTGAAAATGGCCATCCTTGCTTTCAGAAAATG
GAAGAGTTCGGAATAGATATCGAGGAAGGAACCATTATCTTGAGAAGAGATATCTCCGTTTCAGGCAAAAGTGTTTGCCG
AATAAACGGAAAGCTTATAACGATTTCCACATTGAGGGAAATCGGCTCAAGCCTTATTGATATCCATGGCCAGCATGAGC
ATCAGGAATTGATGGATGAAACGAAACATCTCATGCTTCTGGATACGTATGCTCATACAGAACTCGCCCCTGTGCTAAAG
GAATATGAAGCATTATACCGTTCGTATACTCAAACACAAAAAAAGCTTATGAACTTGACTGAAAATGAACAGCAGATGGC
TCATCGTTTGGATTTATTAACCTTTCAGCATCAGGAAATTATTAATGCCAATCTGCAAAAGAATGAAGATGAAGAATTGC
TGGAGGAAAGAAAAAAGCTCGGCAATTTTGAGAGAATCTTCGAAAGCATTCAAACAAGCTATACTGCCTTAAAGGGAGAA
CAAAAGGGATTAGACTGGCTTGGTGAAGTGATGGGGCATATGGAAGAAGCAGCAAGCCTTGATCCAGAGTATAAAGAGAT
TGCAGATTCTGTATCTAACAGTTTTTACATACTGGAGGATGTTGCAAGCAGGCTTCGAAACAGTCTTGATTATCTTGAAT
ATGACCCTGAACGGCTCAATAGTATAGAATCCAGATTGAATGAGATAAATTCACTAAAACGTAAATATGGAAAATCCGTT
GACGAAATATTGGAATATGCCGCTAAAATTGAAGAGGAGCTCGAAACACTCCAAAATAAAGAAACACATATTGATATGCT
TGAAAAAGAATTATTAAGCATCAAAAAGGATTTGTTAGTAGAAGCAAATGAGCTTAGTTCTCTTCGCAAAAAAGCTGCAC
TCCGATTGACAGAAGACATTCATCAAGAACTGAAACAGCTGTATATGGAAAAGACAGTGTTTGAAGTCAGAATTAATGCG
GATGATGATAATGTAACTAAATCTGGTATGGATGATGTGGAGTTTTATATTTCAACAAATCCGGGCGAGCCGCTTAAGCC
ATTGTCTAAAATTGTTTCAGGCGGTGAATTGTCGAGAATGATGCTTGCATTAAAGAGTATTTTTTCTAAGCATCAAGGCG
TGACGTCGATTATCTTTGACGAAGTGGATACAGGTGTCAGCGGTAGAGTTGCACAAGCGATTGCTGAAAAGATATCCAAA
GTTGCAGCAGGTTCACAGGTGCTTTGCATATCCCATATGCCGCAAGTGGCAGCCATGGCAGATACCCATCTTTATATTGC
TAAAGCCATTCATGATGGAAGAACTTCGACGACTGTCACTCCATTGGCAAAACAAGATAAAGTAAAAGAAATTGCCCGAA
TGATATCCGGAACAGAAATTACCGATTTGACAAAAAAACATGCAAAAGAGCTGTTAAAATTAGCCCAAAAGGTCAAGAAT
AATGGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.285

100

0.628