Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG290_RS16705 Genome accession   NZ_CP109506
Coordinates   3777284..3778414 (-) Length   376 a.a.
NCBI ID   WP_329027218.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3772284..3783414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG290_RS16695 (OG290_16720) gyrB 3774273..3776360 (-) 2088 WP_329027216.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG290_RS16700 (OG290_16725) - 3776727..3777287 (-) 561 WP_018522094.1 DciA family protein -
  OG290_RS16705 (OG290_16730) recF 3777284..3778414 (-) 1131 WP_329027218.1 DNA replication/repair protein RecF Machinery gene
  OG290_RS16710 (OG290_16735) gnd 3778499..3779377 (-) 879 WP_132900532.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG290_RS16715 (OG290_16740) dnaN 3779506..3780636 (-) 1131 WP_018522091.1 DNA polymerase III subunit beta -
  OG290_RS16720 (OG290_16745) dnaA 3781573..3783381 (-) 1809 WP_329027222.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40636.22 Da        Isoelectric Point: 6.8617

>NTDB_id=678036 OG290_RS16705 WP_329027218.1 3777284..3778414(-) (recF) [Streptomyces sp. NBC_01423]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSLDLSTLDVWDQHLAGVGAELLAQRLDLIAVLQPLADKAYGDVAPGGGPVTLDYRSSVGAEAG
PARTREELYAQIIEALAGVRKQEIERGVTLVGPHRDDLVLGLRSMPAKGYASHGESWSYALALRLASYELLRGEGNEPVL
VLDDVFAELDARRRERLAELVAPAEQVLVTAAVDDDVPGALAGTRYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=678036 OG290_RS16705 WP_329027218.1 3777284..3778414(-) (recF) [Streptomyces sp. NBC_01423]
ATGCACGTCACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTGCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGGCCAACGGCCAGGGCAAGACGAATCTGGTCGAGGCCGTCGGCTATCTCGCCACGCTCGGCAGTCACCGCG
TTTCCTCGGACGCCCCGCTCGTCCGCATGGGCGCCGAGCGTGCCGTGATCAGGGCGGCCGTCACCCAGGGCGAGCGTTCG
CAGCTGGTCGAGCTGGAGCTCAACCCGGGCCGGGCCAACCGCGCCCGCATCAACAGGTCCTCGCAGGTCAGGCCGCGTGA
CGTGCTCGGCATCGTGCGGACGGTGCTGTTCGCGCCGGAGGACCTGGCCCTGGTGAAGGGCGACCCCGGCGAGCGACGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGGTCGCCCCGGATGGCCGGGGTCCGGTCCGACTACGAGCGCGTGCTGAAGCAG
CGGAACACCCTGCTGAAGTCCGCGGCGATGGCCCGCAGGCACGGCGGCCGCTCCCTCGACCTGTCCACGCTCGACGTGTG
GGACCAGCATCTGGCCGGAGTCGGCGCGGAGCTGCTGGCCCAGCGCCTGGACCTGATCGCCGTGCTCCAGCCCCTGGCCG
ACAAGGCGTACGGGGACGTGGCTCCGGGCGGGGGACCGGTGACGCTGGACTACCGCAGCTCCGTCGGCGCCGAAGCGGGC
CCCGCGCGCACCCGCGAGGAGCTGTACGCGCAGATCATCGAGGCCCTGGCCGGCGTCCGTAAGCAGGAGATCGAACGCGG
AGTGACGCTGGTCGGCCCGCACCGCGACGACCTGGTGCTGGGCCTGCGCTCGATGCCCGCCAAGGGATACGCGAGCCATG
GTGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGAGCTGCTGCGCGGCGAGGGCAACGAACCTGTGCTG
GTGCTGGACGACGTCTTCGCCGAGCTGGACGCGCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCGCCGGCCGAGCAGGT
GCTGGTGACCGCCGCCGTGGACGACGATGTGCCAGGGGCGCTCGCGGGGACGCGGTACGCGGTCACCGCCGGCGAGGTGG
AGCGGGTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.705

97.34

0.367