Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L8T27_RS04640 Genome accession   NZ_CP095743
Coordinates   897905..899722 (+) Length   605 a.a.
NCBI ID   WP_237940956.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 892905..904722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS04620 (L8T27_004625) spxA 893313..893708 (+) 396 WP_233316725.1 transcriptional regulator SpxA -
  L8T27_RS04625 (L8T27_004630) mecA 894130..894789 (+) 660 WP_233316726.1 adaptor protein MecA -
  L8T27_RS04630 (L8T27_004635) cls 894982..896499 (+) 1518 WP_237940952.1 cardiolipin synthase -
  L8T27_RS04635 (L8T27_004640) - 896567..897739 (+) 1173 WP_237940954.1 competence protein CoiA family protein -
  L8T27_RS04640 (L8T27_004645) pepF 897905..899722 (+) 1818 WP_237940956.1 oligoendopeptidase F Regulator
  L8T27_RS04645 (L8T27_004650) - 899759..899938 (-) 180 WP_233316730.1 hypothetical protein -
  L8T27_RS04650 (L8T27_004655) - 900218..901093 (-) 876 WP_233316731.1 ClpXP adapter SpxH family protein -
  L8T27_RS04655 (L8T27_004660) - 901112..901495 (-) 384 WP_233316732.1 globin -
  L8T27_RS04660 (L8T27_004665) - 901768..902427 (-) 660 WP_237940958.1 lytic transglycosylase domain-containing protein -
  L8T27_RS04665 (L8T27_004670) - 902466..903050 (-) 585 WP_233316808.1 CYTH domain-containing protein -
  L8T27_RS04670 (L8T27_004675) - 903207..903575 (+) 369 WP_233316733.1 hypothetical protein -
  L8T27_RS04675 (L8T27_004680) - 903628..904260 (+) 633 WP_245399842.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69814.10 Da        Isoelectric Point: 4.7320

>NTDB_id=678028 L8T27_RS04640 WP_237940956.1 897905..899722(+) (pepF) [Niallia sp. Man26]
MSNETTVKKLPLRNEVPTEDTWRLEDIFASDDDWNKEFEEVTALSKKAGDYQGKLAESADVLYEALQYQDTLLSRLGKLY
TYAHMRYDQDTTNGFYQGLDSRIKNLYAQSASELAYIVPELLSIDEAIIKGFLEEKEELRLYEQSLEEINLQRPHVLSAD
QEALLAQASEVLDASSNTFGMLNNADIEFPSIKDENGEDVEVTHGRYSRFLESADQRVRHDAFKAVYDTYGKFKNTFSST
LSGTVKNHTFNARVRNYKSARHAALAANNIPEQVYENLVETINEYLPLLHRYVKLRKKVLGLEKLHMYDLYTPLVKDVKM
EISYQEATEHILKGLAPLGEEYLSILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYMLKTITDEQERLYLLNHYLEGFRGTVFRQTMFAEFEHLIHEKAQ
NNEALTADLFTSEYYALNKKYYGEEDIIIDEEIGLEWSRIPHFYYDYYVYQYATGYSAATALSKQILEEGKPAVDRYIDF
LKAGSSDYPIEVLKKAGVDMTSKDPIREACKVFEQKLNEMESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=678028 L8T27_RS04640 WP_237940956.1 897905..899722(+) (pepF) [Niallia sp. Man26]
ATGTCTAATGAAACAACTGTAAAAAAACTGCCTTTACGTAATGAAGTTCCAACGGAAGACACATGGAGACTGGAAGACAT
CTTCGCATCTGATGATGACTGGAATAAAGAATTTGAAGAGGTGACGGCCCTCTCGAAAAAAGCAGGGGACTATCAAGGAA
AGCTTGCAGAAAGTGCGGATGTTTTGTACGAAGCGCTTCAATATCAGGATACGCTTTTAAGCCGTTTAGGTAAATTATAT
ACATATGCACATATGCGATATGATCAGGATACAACAAATGGCTTTTATCAAGGCCTGGACAGTCGGATAAAAAATTTATA
TGCACAAAGTGCGAGTGAACTCGCATACATTGTCCCAGAACTTCTATCTATTGATGAAGCAATCATAAAGGGTTTTCTTG
AGGAGAAGGAAGAATTGCGCCTGTACGAACAATCATTGGAGGAAATTAACCTTCAGCGTCCGCATGTTCTTTCAGCAGAT
CAAGAAGCACTTCTTGCCCAAGCATCTGAAGTATTGGATGCATCTAGCAATACATTCGGCATGCTTAATAATGCGGATAT
AGAATTCCCGAGCATTAAAGATGAGAATGGGGAAGATGTGGAAGTTACACATGGCCGCTATTCACGCTTTTTGGAAAGTG
CAGATCAACGTGTGCGTCATGATGCGTTTAAAGCGGTTTATGATACGTATGGGAAATTCAAAAATACGTTTTCATCTACA
TTATCCGGAACAGTAAAAAACCATACATTTAATGCAAGAGTGCGAAATTATAAATCAGCACGGCATGCAGCTCTTGCAGC
TAACAATATTCCTGAACAGGTATATGAAAACCTTGTGGAAACAATCAATGAGTATTTACCATTGCTGCATCGTTATGTAA
AGCTTCGTAAAAAGGTACTTGGTCTTGAGAAGCTTCATATGTATGACTTGTATACTCCGCTTGTTAAGGATGTGAAAATG
GAGATCAGCTATCAAGAAGCTACTGAACATATCCTTAAAGGACTTGCACCGCTAGGAGAGGAGTATTTATCCATTCTGAA
AGAAGGCTTTGAAAACCGATGGGTTGACGTTCACGAGAACAAAGGGAAAAGAAGCGGAGCTTATTCATCAGGAACATACG
GCACCAATCCATATATCCTAATGAACTGGCAGGATAATGTGAATAACCTGTTTACTTTGGCTCATGAATTCGGACATTCT
GTTCACAGCTATTATACAAGAAAATCACAGCCGTACCCGTATGGAAATTATTCGATTTTTGTCGCAGAGGTTGCGTCTAC
ATGCAATGAAGCATTGCTGAACGATTATATGCTAAAAACAATCACAGATGAACAAGAGCGCTTATACTTGCTGAACCATT
ATTTAGAAGGCTTCAGAGGTACTGTATTCCGTCAGACTATGTTCGCAGAGTTTGAGCACCTTATTCATGAAAAGGCGCAA
AATAACGAAGCATTGACAGCTGATTTATTTACTTCCGAGTACTATGCGCTAAACAAAAAGTATTACGGCGAGGAAGATAT
CATTATTGATGAGGAAATCGGCTTAGAATGGTCAAGAATTCCTCACTTCTATTATGATTACTATGTGTACCAATACGCGA
CAGGCTACAGTGCAGCAACAGCTTTAAGCAAACAAATTCTTGAAGAAGGCAAGCCGGCAGTGGATCGCTATATTGATTTC
TTGAAAGCGGGAAGCTCCGACTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTTGATATGACAAGCAAGGACCCAATCAG
AGAGGCTTGCAAAGTATTTGAACAAAAGCTCAACGAAATGGAAAGTCTGCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.663

98.182

0.488