Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   L8T27_RS04520 Genome accession   NZ_CP095743
Coordinates   870923..871888 (+) Length   321 a.a.
NCBI ID   WP_237940941.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 865923..876888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS04500 (L8T27_004505) clpB 866161..868758 (+) 2598 WP_237940937.1 ATP-dependent chaperone ClpB -
  L8T27_RS04505 (L8T27_004510) - 868809..869003 (-) 195 WP_233316702.1 YjzD family protein -
  L8T27_RS04510 (L8T27_004515) - 869224..869964 (+) 741 WP_233316703.1 hydrolase -
  L8T27_RS04515 (L8T27_004520) - 870108..870878 (+) 771 WP_237940939.1 hypothetical protein -
  L8T27_RS04520 (L8T27_004525) med 870923..871888 (+) 966 WP_237940941.1 BMP family ABC transporter substrate-binding protein Regulator
  L8T27_RS04525 (L8T27_004530) - 871964..872329 (-) 366 WP_233316706.1 hypothetical protein -
  L8T27_RS04530 (L8T27_004535) - 872584..873522 (+) 939 WP_233316707.1 beta-ketoacyl-ACP synthase III -
  L8T27_RS04535 (L8T27_004540) fabF 873576..874814 (+) 1239 WP_233316708.1 beta-ketoacyl-ACP synthase II -
  L8T27_RS04540 (L8T27_004545) - 875073..875495 (+) 423 WP_233316709.1 Fur family transcriptional regulator -
  L8T27_RS04545 (L8T27_004550) - 875757..876506 (+) 750 WP_237940943.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35622.59 Da        Isoelectric Point: 5.2201

>NTDB_id=678024 L8T27_RS04520 WP_237940941.1 870923..871888(+) (med) [Niallia sp. Man26]
MKKMKLMLSLFILLSTFFLASCGQAEKKGQLKSVGLLVTGTVTDQVWGTKGYKGLLNIQSHYNVDVYYKEYIDSLALAER
AIEEFDQKGVNLIFGHGSEFADYFNILSEKYPDIHFISFNGSAKNDNTTSASFEGYAMGFFGGMVAGHMTKTNTISVIGA
FDWQPEIQGFIDGAKYENKNVEVLTDFVQGWDNREQALKLLDSAIAKDADIIYPAGDGFNIDIIEQVKAKGLYAIGYVSE
QSDLGRMTVLTSTVQNVSKMFDILAGKFNEGKLVSGDISYGMKENVITLGKFSPNIDAAFIQKINKEMKQYKETGKFPNN
Q

Nucleotide


Download         Length: 966 bp        

>NTDB_id=678024 L8T27_RS04520 WP_237940941.1 870923..871888(+) (med) [Niallia sp. Man26]
ATGAAAAAAATGAAGCTAATGCTGTCCCTTTTCATCCTGCTGAGCACCTTTTTTCTTGCCTCCTGCGGACAAGCCGAAAA
AAAGGGGCAATTGAAAAGTGTAGGATTGCTCGTGACTGGAACGGTTACAGACCAAGTCTGGGGCACGAAAGGATATAAGG
GGCTGTTAAATATACAATCACATTATAATGTGGATGTTTATTATAAGGAGTATATTGATTCCCTTGCCCTTGCAGAAAGA
GCGATCGAGGAATTCGATCAAAAAGGGGTAAATCTCATCTTTGGGCATGGCAGTGAATTTGCGGATTATTTTAATATTTT
GTCTGAAAAATATCCTGACATCCATTTTATCAGCTTTAATGGCAGCGCTAAAAATGATAATACAACTAGCGCCTCGTTTG
AAGGCTATGCGATGGGCTTTTTCGGAGGAATGGTCGCAGGCCATATGACAAAGACCAATACAATCTCTGTTATTGGAGCC
TTTGACTGGCAGCCTGAGATACAAGGATTTATAGACGGAGCTAAGTATGAGAATAAAAATGTGGAGGTTCTGACTGATTT
TGTACAGGGGTGGGATAATCGTGAACAGGCACTGAAGCTGCTCGATTCGGCGATTGCCAAAGATGCTGATATTATTTATC
CTGCAGGTGACGGATTTAATATCGATATCATCGAACAAGTAAAGGCGAAGGGCCTTTATGCAATTGGTTATGTTTCTGAA
CAATCTGATCTTGGCAGAATGACTGTTTTAACAAGCACCGTGCAAAATGTATCAAAAATGTTTGATATACTTGCTGGCAA
ATTTAACGAAGGCAAGCTCGTATCAGGCGATATATCTTACGGAATGAAGGAAAATGTCATCACATTAGGAAAGTTCAGCC
CTAATATTGATGCGGCATTTATCCAAAAAATCAATAAGGAAATGAAGCAATATAAAGAGACAGGCAAATTTCCTAATAAC
CAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(32-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.025

100

0.52