Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L8T27_RS01405 Genome accession   NZ_CP095743
Coordinates   261016..261972 (+) Length   318 a.a.
NCBI ID   WP_233316885.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 256016..266972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS01385 (L8T27_001385) qoxA 256966..257910 (+) 945 WP_233316882.1 cytochrome aa3 quinol oxidase subunit II -
  L8T27_RS01390 (L8T27_001390) qoxB 257910..259865 (+) 1956 WP_233316883.1 cytochrome aa3 quinol oxidase subunit I -
  L8T27_RS01395 (L8T27_001395) qoxC 259862..260464 (+) 603 WP_233316939.1 cytochrome aa3 quinol oxidase subunit III -
  L8T27_RS01400 (L8T27_001400) qoxD 260468..260767 (+) 300 WP_233316884.1 cytochrome aa3 quinol oxidase subunit IV -
  L8T27_RS01405 (L8T27_001405) ceuB 261016..261972 (+) 957 WP_233316885.1 ABC transporter permease Machinery gene
  L8T27_RS01410 (L8T27_001410) - 261959..262915 (+) 957 WP_237940573.1 iron chelate uptake ABC transporter family permease subunit -
  L8T27_RS01415 (L8T27_001415) - 262909..263667 (+) 759 WP_233316887.1 ABC transporter ATP-binding protein -
  L8T27_RS01420 (L8T27_001420) - 263941..264888 (+) 948 WP_282581412.1 siderophore ABC transporter substrate-binding protein -
  L8T27_RS01425 (L8T27_001425) - 265042..266031 (+) 990 WP_233316888.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35320.77 Da        Isoelectric Point: 9.8939

>NTDB_id=678014 L8T27_RS01405 WP_233316885.1 261016..261972(+) (ceuB) [Niallia sp. Man26]
MKIRYLAIMLIVLSIASLFIGVIDINPLSIFKLTEDQKEILLISRFPRLISIIIAGVSLSVCGLIMQQITRNKFVSPTTA
GTMDWARFGILIALMMFTTATPIVKMLVAFVFALLGTFLFMQILNRIKFKDAIFIPLVGLMLGNIISSITTFFSMKNDLV
QNMSSWLQGDFSLIMEGRYELLYISIPVVIIAYLYANKFTIAGMGEEFSTNLGLNHKRVVNIGLIIVALVSSVVLLTVGM
IPFLGLIIPNIVSLYRGDNLKNSLTHTALLGANFVLICDILGRIIIYPYEISIGVMVGVIGSAIFLYLLIRRRTYESA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=678014 L8T27_RS01405 WP_233316885.1 261016..261972(+) (ceuB) [Niallia sp. Man26]
ATGAAGATAAGATATTTAGCCATCATGTTAATAGTGTTGTCAATCGCCTCCTTGTTTATAGGAGTTATTGATATTAATCC
TTTGAGCATCTTTAAGCTGACAGAGGATCAAAAAGAAATATTATTAATCAGCAGGTTCCCCCGATTAATAAGCATTATTA
TTGCAGGTGTAAGCCTTAGCGTTTGCGGACTAATTATGCAGCAAATTACCAGAAATAAATTTGTGTCTCCAACAACAGCA
GGCACGATGGACTGGGCAAGATTTGGCATTCTTATTGCGCTCATGATGTTCACAACTGCAACTCCGATTGTTAAAATGCT
TGTTGCCTTCGTTTTTGCATTGCTTGGTACATTCCTGTTTATGCAAATACTGAATCGAATCAAATTTAAGGATGCCATTT
TCATCCCGCTTGTCGGCTTGATGCTTGGAAACATCATCAGCTCCATTACAACATTCTTTTCTATGAAGAATGATCTTGTA
CAAAACATGTCATCATGGCTCCAAGGTGATTTTTCACTGATCATGGAAGGAAGATATGAGCTCCTGTACATAAGCATTCC
TGTCGTCATTATCGCATATCTATATGCGAACAAATTCACAATCGCCGGCATGGGTGAAGAGTTCTCCACGAACTTAGGTC
TTAACCATAAAAGAGTGGTAAATATTGGGTTGATTATTGTTGCCCTTGTTTCATCAGTTGTACTGCTCACGGTCGGTATG
ATTCCATTTTTAGGGCTTATCATTCCTAATATAGTCTCTCTCTACAGAGGAGATAACTTGAAGAACAGCTTAACGCACAC
AGCATTACTTGGTGCAAACTTTGTGCTGATATGCGATATCCTTGGACGGATAATCATTTATCCTTATGAAATCTCGATAG
GTGTAATGGTTGGCGTTATCGGGAGTGCCATATTCCTTTATTTATTGATAAGGAGAAGAACGTATGAATCAGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

99.371

0.525