Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L8T27_RS00570 Genome accession   NZ_CP095743
Coordinates   108135..109514 (+) Length   459 a.a.
NCBI ID   WP_192486448.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103135..114514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS00550 (L8T27_000550) - 103458..103919 (+) 462 WP_192486452.1 CtsR family transcriptional regulator -
  L8T27_RS00555 (L8T27_000555) - 103944..104492 (+) 549 WP_233318650.1 UvrB/UvrC motif-containing protein -
  L8T27_RS00560 (L8T27_000560) - 104496..105563 (+) 1068 WP_237940530.1 protein arginine kinase -
  L8T27_RS00565 (L8T27_000565) clpC 105588..108038 (+) 2451 WP_192486449.1 ATP-dependent protease ATP-binding subunit ClpC -
  L8T27_RS00570 (L8T27_000570) radA 108135..109514 (+) 1380 WP_192486448.1 DNA repair protein RadA Machinery gene
  L8T27_RS00575 (L8T27_000575) - 109742..110821 (+) 1080 WP_192486447.1 PIN/TRAM domain-containing protein -
  L8T27_RS00580 (L8T27_000580) ispD 110840..111529 (+) 690 WP_192486446.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L8T27_RS00585 (L8T27_000585) ispF 111550..112029 (+) 480 WP_237940531.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  L8T27_RS00590 (L8T27_000590) gltX 112109..113566 (+) 1458 WP_237940533.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49710.26 Da        Isoelectric Point: 6.6154

>NTDB_id=678013 L8T27_RS00570 WP_192486448.1 108135..109514(+) (radA) [Niallia sp. Man26]
MAKRKTKFLCQECGYESAKWMGKCPGCGNWNTMVEEVEKAPAQRKGAFAHSQGVTIAAKPIPVTSIETVNEPRIKTDLEE
LNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLALKKQSVLYVSGEESQKQTKLRADRLGVMSDDLLVYSETNLEEI
SRTIENSKVDFVVIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKTTRATDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERVILPANNLSGLSAPKGIELIGVSSVGEALKAALGE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=678013 L8T27_RS00570 WP_192486448.1 108135..109514(+) (radA) [Niallia sp. Man26]
ATGGCGAAAAGAAAGACAAAGTTCTTATGTCAGGAATGCGGCTATGAGTCTGCAAAATGGATGGGTAAATGTCCAGGCTG
TGGAAATTGGAATACAATGGTGGAAGAAGTAGAAAAGGCTCCAGCACAGAGGAAAGGGGCATTTGCTCATTCTCAAGGTG
TGACAATAGCTGCCAAGCCTATTCCTGTAACAAGCATTGAGACAGTTAATGAGCCTCGAATTAAAACAGATCTAGAAGAG
CTTAACCGCGTGCTCGGAGGTGGGGTGGTACCTGGTTCTCTTGTGCTTATCGGAGGAGATCCGGGGATTGGGAAATCGAC
ACTGCTCTTGCAGGTATCTGCACAATTAGCCCTGAAAAAACAGTCTGTTTTATATGTTTCAGGGGAGGAATCACAAAAAC
AAACAAAGCTGAGAGCGGACAGGCTTGGAGTTATGTCTGATGATCTCCTTGTATATTCAGAGACAAACTTAGAGGAAATC
AGCAGAACGATAGAAAACTCAAAGGTAGATTTTGTGGTAATAGACTCTATCCAAACAATTTTTCATCCAGAAGTCACTTC
TGCCCCGGGGAGTGTCTCCCAAGTGCGAGAGTGTACAGCTGAACTGATGAGGATAGGAAAGACAAAGGGAATTGCCATTT
TTATAGTTGGTCATGTGACAAAGGAAGGGTCTATTGCAGGCCCAAGACTGCTTGAGCACATGGTGGATACCGTTTTATAT
TTTGAGGGAGAACGACATCATACCTACAGGATATTGCGGGCTGTTAAAAACCGTTTCGGCTCCACGAATGAAATGGGAAT
CTTTGAAATGAAGGAATTTGGACTGGAAGAAGTGGAAAATCCATCAGAAATATTTCTGGAGGAACGTTCACAAGGTGCTG
CTGGATCAACAGTTGTGGCATCCATGGAAGGAACAAGACCTGTGCTTGTCGAGATACAAGCCCTTATTTCTCCAACAAGC
TTTGGAAATCCAAGACGGATGGCAACAGGGATAGATCATAATCGTGTGCCATTATTGATGGCAGTACTTGAAAAAAGAGT
TGGAATGCTGTTGCAAAACCAAGATGCTTATTTAAAGGTTGCGGGCGGAGTTAAGCTTGATGAACCGGCGATTGATCTTG
CTATAGCTGTTAGTATTGCTTCCAGCTTCAGAGATAAGACCACAAGGGCGACAGACTGCATTATTGGAGAAGTAGGTCTG
ACTGGGGAAGTGCGAAGAGTATCCAGAATCGAACAACGAGTACAAGAAGCGGCTAAATTAGGATTTGAGCGCGTTATATT
GCCTGCTAATAACCTATCAGGTCTTAGTGCTCCCAAGGGGATTGAACTGATTGGTGTCAGTTCTGTTGGAGAGGCGTTAA
AAGCTGCCTTAGGAGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.996

100

0.78
  radA Streptococcus mitis NCTC 12261

63.656

98.911

0.63
  radA Streptococcus mitis SK321

63.436

98.911

0.627
  radA Streptococcus pneumoniae TIGR4

62.996

98.911

0.623
  radA Streptococcus pneumoniae D39

62.996

98.911

0.623
  radA Streptococcus pneumoniae Rx1

62.996

98.911

0.623
  radA Streptococcus pneumoniae R6

62.996

98.911

0.623