Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG906_RS19800 Genome accession   NZ_CP109500
Coordinates   4460198..4461175 (+) Length   325 a.a.
NCBI ID   WP_329444559.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4455198..4466175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS19780 (OG906_19780) - 4456484..4457158 (+) 675 WP_329444556.1 TetR/AcrR family transcriptional regulator -
  OG906_RS19785 (OG906_19785) - 4457243..4458775 (+) 1533 WP_329444558.1 MFS transporter -
  OG906_RS19790 (OG906_19790) - 4458894..4459661 (+) 768 WP_329448066.1 class III extradiol ring-cleavage dioxygenase -
  OG906_RS19795 (OG906_19795) - 4459725..4459975 (-) 251 Protein_3901 GNAT family N-acetyltransferase -
  OG906_RS19800 (OG906_19800) rpoS 4460198..4461175 (+) 978 WP_329444559.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG906_RS19805 (OG906_19805) - 4461315..4462259 (-) 945 WP_329444561.1 YafY family protein -
  OG906_RS19810 (OG906_19810) - 4462496..4463887 (+) 1392 WP_329448067.1 MFS transporter -
  OG906_RS19815 (OG906_19815) - 4464086..4464847 (+) 762 WP_267801778.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG906_RS19820 (OG906_19820) pfkB 4464844..4465794 (+) 951 WP_329444564.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36509.20 Da        Isoelectric Point: 4.9609

>NTDB_id=677970 OG906_RS19800 WP_329444559.1 4460198..4461175(+) (rpoS) [Streptomyces sp. NBC_01426]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYARQILDDAIERTGETPSREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEVAAELDSTEKRVGDVLDWARDPVSLNMAVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=677970 OG906_RS19800 WP_329444559.1 4460198..4461175(+) (rpoS) [Streptomyces sp. NBC_01426]
ATGGCAACCCGCGCCGTCGCCCGCCGTCAGTCCACGAGCAGCGCTCGCGCCGTGGGCGGGGAGATCGCAGACCGTGACCT
GGTCGGCATGTACCTCGACGAGATCGCGCGCACCCCGTTGCTCGACGCGGCCAAGGAAGTGGAGCTTTCGCAGATCATCG
AGGCGGGCGTGTACGCCCGACAGATCCTCGACGACGCGATAGAGCGCACGGGGGAGACCCCGTCCCGCGAGGAGCTGGAG
GCGCTCGCCGCCGAAGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCGAACCTCCGCCTCGTCGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCTCTGCTCGACCTCATCCAGGAGGGCAACGCGGGCCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGTCGGGTGCAGCGCGAGTTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCGGAGGTCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTCGGCGACGTCCTGGACT
GGGCCCGTGACCCGGTCAGCCTCAACATGGCGGTGGACGACGACGGCGACACGCAGTTCGGTGACCTCCTGGAGGACACC
TCGGCGATCTCCCCGGAGCAGTCCGTGCTGTCGTTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACCGCGTCGATCATCAAGATGCGTTACGGCATCGACGACGGTCGGGAGCGTACGCTGACAGAGGTGGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGTTGCTGGAACTGAAGAAGATGGCGCGTGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-314)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366