Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG906_RS10065 Genome accession   NZ_CP109500
Coordinates   2336704..2337495 (+) Length   263 a.a.
NCBI ID   WP_329441905.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2331704..2342495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS10055 (OG906_10060) - 2332670..2335558 (-) 2889 WP_329441902.1 vitamin B12-dependent ribonucleotide reductase -
  OG906_RS10060 (OG906_10065) nrdR 2335715..2336230 (-) 516 WP_267803481.1 transcriptional regulator NrdR -
  OG906_RS10065 (OG906_10070) dinR/lexA 2336704..2337495 (+) 792 WP_329441905.1 transcriptional repressor LexA Regulator
  OG906_RS10070 (OG906_10075) - 2337610..2339580 (-) 1971 WP_329441907.1 ATP-dependent DNA helicase -
  OG906_RS10075 (OG906_10080) - 2339633..2341489 (-) 1857 WP_329441909.1 IucA/IucC family siderophore biosynthesis protein -
  OG906_RS10080 (OG906_10085) - 2341583..2342266 (-) 684 WP_329441911.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28537.24 Da        Isoelectric Point: 7.4240

>NTDB_id=677939 OG906_RS10065 WP_329441905.1 2336704..2337495(+) (dinR/lexA) [Streptomyces sp. NBC_01426]
MTTTADSATITAQNRSQSRLEPVHSMNDASQNPETEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=677939 OG906_RS10065 WP_329441905.1 2336704..2337495(+) (dinR/lexA) [Streptomyces sp. NBC_01426]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATTCCATGAA
TGACGCAAGTCAGAATCCGGAGACGGAGCCCGCCCGCCCCGCTCGCTCGCTGCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGTTCCGGACTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATCCGCGACTCCGTGCAGCGCAGGGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTGGGACTGTCCAGCACCTCGTCGGTCGCGCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCCAGCTCGCAGCCCACGG
ACACCACCGGCAAGCCTGCCGCGTCGTACGTGCCCCTGGTGGGTCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAA
TCGGTCGAGGACGTGTTCCCCCTCCCCCGCCAGCTGGTGGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCGATCTGTGACGGTGACTGGGTCACCGTCCGGCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAAGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCCATTCCGGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCCGTACTGCGCAGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376