Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MX663_RS12205 Genome accession   NZ_CP095736
Coordinates   2346441..2347061 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain N4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2341441..2352061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS12165 (MX663_12165) ypqE 2342574..2343080 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  MX663_RS12170 (MX663_12170) ypqA 2343218..2343637 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  MX663_RS12175 (MX663_12175) yppG 2343658..2344035 (-) 378 WP_247470506.1 YppG family protein -
  MX663_RS12180 (MX663_12180) yppF 2344222..2344410 (+) 189 WP_003230690.1 YppF family protein -
  MX663_RS12185 (MX663_12185) yppE 2344449..2344820 (-) 372 WP_003246080.1 YppE family protein -
  MX663_RS12190 (MX663_12190) yppD 2344866..2345111 (-) 246 WP_004398488.1 YppD family protein -
  MX663_RS12195 (MX663_12195) sspM 2345309..2345413 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MX663_RS12200 (MX663_12200) yppC 2345438..2346400 (-) 963 WP_144530210.1 DUF2515 domain-containing protein -
  MX663_RS12205 (MX663_12205) recU 2346441..2347061 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MX663_RS12210 (MX663_12210) ponA 2347083..2349842 (+) 2760 WP_038429203.1 PBP1A family penicillin-binding protein -
  MX663_RS12215 (MX663_12215) ypoC 2349918..2350412 (-) 495 WP_009967579.1 YpoC family protein -
  MX663_RS12220 (MX663_12220) nth 2350409..2351068 (-) 660 WP_009967580.1 endonuclease III -
  MX663_RS12225 (MX663_12225) dnaD 2351087..2351785 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=677861 MX663_RS12205 WP_004399067.1 2346441..2347061(+) (recU) [Bacillus subtilis strain N4]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=677861 MX663_RS12205 WP_004399067.1 2346441..2347061(+) (recU) [Bacillus subtilis strain N4]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1