Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | MX663_RS11395 | Genome accession | NZ_CP095736 |
| Coordinates | 2214663..2215793 (+) | Length | 376 a.a. |
| NCBI ID | WP_032725937.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain N4 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2203181..2256756 | 2214663..2215793 | within | 0 |
Gene organization within MGE regions
Location: 2203181..2256756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MX663_RS11310 (MX663_11310) | - | 2203181..2203690 (-) | 510 | WP_131227494.1 | super-infection exclusion protein B | - |
| MX663_RS11315 (MX663_11315) | - | 2203711..2204199 (-) | 489 | WP_131227495.1 | hypothetical protein | - |
| MX663_RS11320 (MX663_11320) | - | 2204248..2205132 (-) | 885 | WP_131227496.1 | DUF5677 domain-containing protein | - |
| MX663_RS11325 (MX663_11325) | - | 2205212..2205427 (-) | 216 | WP_247470457.1 | hypothetical protein | - |
| MX663_RS11330 (MX663_11330) | - | 2205458..2205559 (+) | 102 | Protein_2186 | hypothetical protein | - |
| MX663_RS11335 (MX663_11335) | - | 2205671..2205901 (+) | 231 | WP_131227497.1 | hypothetical protein | - |
| MX663_RS11340 (MX663_11340) | - | 2205906..2206298 (-) | 393 | WP_029727206.1 | UPF0715 family protein | - |
| MX663_RS11345 (MX663_11345) | - | 2206343..2206564 (-) | 222 | WP_116315615.1 | hypothetical protein | - |
| MX663_RS11350 (MX663_11350) | - | 2206641..2207750 (-) | 1110 | WP_131227498.1 | AAA family ATPase | - |
| MX663_RS11355 (MX663_11355) | - | 2207740..2208516 (-) | 777 | WP_131227499.1 | DUF6414 family protein | - |
| MX663_RS11360 (MX663_11360) | - | 2208779..2209846 (-) | 1068 | WP_131227500.1 | hypothetical protein | - |
| MX663_RS11365 (MX663_11365) | - | 2210236..2211141 (+) | 906 | WP_032725934.1 | S8 family serine peptidase | - |
| MX663_RS11370 (MX663_11370) | - | 2211161..2212078 (+) | 918 | WP_247470458.1 | SAR2788 family putative toxin | - |
| MX663_RS11375 (MX663_11375) | - | 2212107..2212472 (+) | 366 | WP_029318057.1 | hypothetical protein | - |
| MX663_RS11380 (MX663_11380) | - | 2212653..2212928 (+) | 276 | Protein_2196 | SOS response-associated peptidase family protein | - |
| MX663_RS11385 (MX663_11385) | - | 2213212..2213577 (+) | 366 | WP_131227502.1 | YoqO family protein | - |
| MX663_RS11390 (MX663_11390) | - | 2214383..2214529 (+) | 147 | Protein_2198 | phage holin | - |
| MX663_RS11395 (MX663_11395) | rapC | 2214663..2215793 (+) | 1131 | WP_032725937.1 | tetratricopeptide repeat protein | Regulator |
| MX663_RS11400 (MX663_11400) | - | 2215783..2215926 (+) | 144 | WP_153801665.1 | hypothetical protein | - |
| MX663_RS11405 (MX663_11405) | - | 2216080..2216280 (-) | 201 | WP_021481449.1 | hypothetical protein | - |
| MX663_RS11410 (MX663_11410) | - | 2216503..2216675 (-) | 173 | Protein_2202 | hypothetical protein | - |
| MX663_RS11415 (MX663_11415) | - | 2216670..2216825 (-) | 156 | Protein_2203 | T7SS effector LXG polymorphic toxin | - |
| MX663_RS11420 (MX663_11420) | yobM | 2216926..2217483 (-) | 558 | WP_247470461.1 | SMI1/KNR4 family protein | - |
| MX663_RS11425 (MX663_11425) | yobN | 2217611..2219047 (+) | 1437 | WP_154231164.1 | flavin monoamine oxidase family protein | - |
| MX663_RS11430 (MX663_11430) | csaA | 2219297..2219629 (-) | 333 | WP_247470464.1 | chaperone CsaA | - |
| MX663_RS11435 (MX663_11435) | yobQ | 2219694..2220419 (-) | 726 | WP_080265377.1 | helix-turn-helix domain-containing protein | - |
| MX663_RS11440 (MX663_11440) | yobR | 2220434..2221177 (-) | 744 | WP_167408222.1 | GNAT family N-acetyltransferase | - |
| MX663_RS11445 (MX663_11445) | yobS | 2221255..2221830 (-) | 576 | WP_017697555.1 | TetR/AcrR family transcriptional regulator | - |
| MX663_RS11450 (MX663_11450) | yobT | 2221836..2222537 (-) | 702 | WP_003231294.1 | MBL fold metallo-hydrolase | - |
| MX663_RS11455 (MX663_11455) | yobU | 2222614..2223096 (-) | 483 | WP_014480008.1 | GyrI-like domain-containing protein | - |
| MX663_RS11460 (MX663_11460) | yobV | 2223150..2224091 (-) | 942 | WP_131227507.1 | YafY family protein | - |
| MX663_RS11465 (MX663_11465) | csk22 | 2224298..2224843 (+) | 546 | WP_015251914.1 | mother cell-specific sporulation protein Csk22 | - |
| MX663_RS11470 (MX663_11470) | czrA | 2224870..2225193 (-) | 324 | WP_003231284.1 | Zn(II)-responsive metalloregulatory transcriptional repressor CzrA | - |
| MX663_RS11475 (MX663_11475) | yocA | 2225387..2226064 (+) | 678 | WP_003231283.1 | lysozyme family protein | - |
| MX663_RS11480 (MX663_11480) | yozB | 2226154..2226690 (-) | 537 | WP_003231280.1 | DUF420 domain-containing protein | - |
| MX663_RS11485 (MX663_11485) | yocB | 2226827..2227609 (-) | 783 | WP_173614139.1 | VLRF1 family aeRF1-type release factor | - |
| MX663_RS11490 (MX663_11490) | - | 2227780..2228277 (+) | 498 | WP_247470465.1 | hypothetical protein | - |
| MX663_RS11495 (MX663_11495) | yocD | 2228341..2229318 (+) | 978 | WP_197196163.1 | LD-carboxypeptidase | - |
| MX663_RS11500 (MX663_11500) | desE | 2229480..2230538 (+) | 1059 | WP_029726828.1 | fatty acid desaturase DesE | - |
| MX663_RS11505 (MX663_11505) | desK | 2230658..2231770 (+) | 1113 | WP_015251908.1 | two-component sensor histidine kinase DesK | - |
| MX663_RS11510 (MX663_11510) | desR | 2231789..2232388 (+) | 600 | WP_004399356.1 | two-component system response regulator DesR | - |
| MX663_RS11515 (MX663_11515) | walL | 2232993..2233856 (-) | 864 | WP_003231267.1 | 3D domain-containing protein | - |
| MX663_RS11520 (MX663_11520) | recQ | 2234103..2235878 (-) | 1776 | WP_041351145.1 | DNA helicase RecQ | - |
| MX663_RS11530 (MX663_11530) | azoJ | 2236444..2237070 (-) | 627 | WP_003231260.1 | FMN-dependent NADH-azoreductase AzoJ | - |
| MX663_RS11535 (MX663_11535) | yocK | 2237221..2237712 (-) | 492 | WP_003231259.1 | TraR/DksA family transcriptional regulator | - |
| MX663_RS11540 (MX663_11540) | - | 2237787..2238119 (-) | 333 | WP_173614141.1 | hypothetical protein | - |
| MX663_RS11545 (MX663_11545) | - | 2238197..2238424 (+) | 228 | WP_015383862.1 | hypothetical protein | - |
| MX663_RS11550 (MX663_11550) | yocM | 2238411..2238887 (-) | 477 | WP_122895479.1 | salt stress-responsive protein YocM | - |
| MX663_RS11555 (MX663_11555) | - | 2238954..2239217 (+) | 264 | WP_004399338.1 | hypothetical protein | - |
| MX663_RS11560 (MX663_11560) | - | 2239222..2239455 (+) | 234 | WP_003231251.1 | hypothetical protein | - |
| MX663_RS11565 (MX663_11565) | yozO | 2239535..2239879 (-) | 345 | WP_003220141.1 | PH domain-containing protein | - |
| MX663_RS11570 (MX663_11570) | yozC | 2240233..2240436 (-) | 204 | WP_003231245.1 | DUF6501 family protein | - |
| MX663_RS11575 (MX663_11575) | dhaS | 2240667..2242154 (+) | 1488 | WP_015714095.1 | aldehyde dehydrogenase DhaS | - |
| MX663_RS11580 (MX663_11580) | sqhC | 2242255..2244153 (+) | 1899 | WP_029318040.1 | sporulenol synthase | - |
| MX663_RS11585 (MX663_11585) | sodF | 2244143..2244988 (+) | 846 | WP_019712210.1 | superoxide dismutase | - |
| MX663_RS11590 (MX663_11590) | yocR | 2245021..2246358 (-) | 1338 | WP_014477075.1 | sodium-dependent transporter | - |
| MX663_RS11595 (MX663_11595) | yocS | 2246577..2247542 (+) | 966 | WP_004399225.1 | bile acid:sodium symporter family protein | - |
| MX663_RS11600 (MX663_11600) | odhB | 2247592..2248845 (-) | 1254 | WP_029318039.1 | 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | - |
| MX663_RS11605 (MX663_11605) | sucA | 2248861..2251695 (-) | 2835 | WP_029318038.1 | 2-oxoglutarate dehydrogenase E1 component | - |
| MX663_RS11610 (MX663_11610) | yojO | 2251924..2253840 (-) | 1917 | WP_247470467.1 | nitric oxide reductase activation protein NorD | - |
| MX663_RS11615 (MX663_11615) | yojN | 2253851..2254765 (-) | 915 | WP_015251896.1 | MoxR family ATPase | - |
| MX663_RS11620 (MX663_11620) | sodC | 2254829..2255419 (-) | 591 | WP_004399243.1 | superoxide dismutase family protein | - |
| MX663_RS11625 (MX663_11625) | cwlS | 2255512..2256756 (-) | 1245 | WP_004399265.1 | D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 44394.15 Da Isoelectric Point: 5.7041
>NTDB_id=677860 MX663_RS11395 WP_032725937.1 2214663..2215793(+) (rapC) [Bacillus subtilis strain N4]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI
Nucleotide
Download Length: 1131 bp
>NTDB_id=677860 MX663_RS11395 WP_032725937.1 2214663..2215793(+) (rapC) [Bacillus subtilis strain N4]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
51.064 |
100 |
0.511 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
45.119 |
100 |
0.455 |