Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MX663_RS05715 Genome accession   NZ_CP095736
Coordinates   1106740..1107318 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain N4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101740..1112318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS05695 (MX663_05695) hemAT 1102251..1103549 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  MX663_RS05700 (MX663_05700) yhfW 1103688..1105217 (-) 1530 WP_129137558.1 FAD-dependent oxidoreductase -
  MX663_RS05705 (MX663_05705) yhxC 1105329..1106186 (+) 858 WP_247471462.1 SDR family oxidoreductase -
  MX663_RS05710 (MX663_05710) yhzC 1106214..1106447 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MX663_RS05715 (MX663_05715) comK 1106740..1107318 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  MX663_RS05720 (MX663_05720) yhxD 1107365..1108264 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  MX663_RS05725 (MX663_05725) yhjA 1108481..1108750 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  MX663_RS05730 (MX663_05730) yhjB 1108794..1110263 (-) 1470 WP_003233134.1 sodium:solute symporter -
  MX663_RS05735 (MX663_05735) yhjC 1110260..1110460 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  MX663_RS05740 (MX663_05740) - 1110659..1111030 (-) 372 WP_014476361.1 hypothetical protein -
  MX663_RS05745 (MX663_05745) yhjE 1111182..1111805 (+) 624 WP_010886465.1 VTT domain-containing protein -
  MX663_RS05750 (MX663_05750) lepB 1111807..1112313 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=677840 MX663_RS05715 WP_003245329.1 1106740..1107318(+) (comK) [Bacillus subtilis strain N4]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=677840 MX663_RS05715 WP_003245329.1 1106740..1107318(+) (comK) [Bacillus subtilis strain N4]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1