Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG522_RS25600 Genome accession   NZ_CP109496
Coordinates   5608063..5609796 (-) Length   577 a.a.
NCBI ID   WP_329467736.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01431     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5603063..5614796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG522_RS25590 (OG522_25585) - 5604795..5606035 (+) 1241 Protein_5044 RNA polymerase sigma factor -
  OG522_RS25595 (OG522_25590) rcrQ 5606087..5608066 (-) 1980 WP_329465339.1 ABC transporter ATP-binding protein Regulator
  OG522_RS25600 (OG522_25595) rcrP 5608063..5609796 (-) 1734 WP_329467736.1 ABC transporter ATP-binding protein Regulator
  OG522_RS25605 (OG522_25600) - 5609926..5611371 (-) 1446 WP_329465340.1 FGGY family carbohydrate kinase -
  OG522_RS25610 (OG522_25605) - 5611452..5611754 (-) 303 WP_329465341.1 YtxH domain-containing protein -
  OG522_RS25630 (OG522_25625) - 5612798..5613376 (-) 579 WP_329465342.1 GNAT family N-acetyltransferase -
  OG522_RS25635 (OG522_25630) - 5613373..5613717 (-) 345 WP_329465343.1 hypothetical protein -
  OG522_RS25640 (OG522_25635) - 5614227..5614406 (-) 180 WP_329465344.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62476.45 Da        Isoelectric Point: 5.9243

>NTDB_id=677832 OG522_RS25600 WP_329467736.1 5608063..5609796(-) (rcrP) [Streptomyces sp. NBC_01431]
MLIRLLRTHLGPYKKPIALLVLLQLLQTSATLYLPTLNANIIDNGVVNGDTGYILGHGGIMIAVSLVQVFCNIGAVYFGA
RTAAALGRDVRAAVFARVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRKMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDEYEQDRFRGANTDLTDVSLSTGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSGDMQIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDTSVVP
PENPVRELRRHGHLEVRGADFKYPGAEASVLRGVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGAVLVDGEDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVSKLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIFLFDDSFSALDYATDAALRSALGRETAEATVVIVAQRVSTIRDADRIIVLDEGQVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=677832 OG522_RS25600 WP_329467736.1 5608063..5609796(-) (rcrP) [Streptomyces sp. NBC_01431]
GTGCTCATACGACTCCTGCGGACCCATCTAGGGCCGTACAAGAAACCGATTGCCCTGCTGGTGCTGCTGCAACTGCTGCA
GACCAGCGCCACCCTTTATCTGCCCACCCTGAACGCGAACATCATTGACAACGGTGTCGTGAACGGGGACACGGGTTACA
TCCTGGGGCACGGCGGCATCATGATCGCCGTCAGCCTCGTCCAGGTGTTCTGCAACATCGGTGCCGTCTACTTCGGCGCC
AGGACCGCCGCGGCCCTCGGCCGTGACGTGCGGGCCGCCGTCTTCGCGCGGGTCCAGTCGTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGGGCGCCGTCCCTGATCACCCGCACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTCATGGCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCCGCGGTG
CTGCTCGCGGTCGTCCCGGTCCTCGGCATCGCCGTCTCGCTGATCGTGCGCAAGATGCGGCCGCTGTTCCGCACCATGCA
GACCCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGGGCCTTCGTCCGGGACG
AGTACGAGCAGGACCGCTTCCGCGGCGCCAACACCGACCTGACCGACGTCTCGCTGTCCACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTCATGACCGTCGTGAACGTCTCCTCGGTCGCGGTCGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
GGACATGCAGATCGGCCAGCTCACCGCGTTCCTCGCGTACCTCATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCGAGGAGGTGCTCGGGACCGACACCAGCGTGGTGCCG
CCCGAGAACCCGGTGCGCGAGCTGCGCCGGCACGGTCATCTGGAGGTGCGCGGCGCCGACTTCAAGTACCCGGGCGCGGA
GGCCTCCGTGCTGCGGGGCGTGGAGCTCGTGGCCCGGCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGAA
AGTCGACACTGCTCGGCCTCGTGCCGCGCCTGTTCGACGCGACCGACGGCGCGGTCCTGGTCGACGGCGAGGACGTCCGC
ACGCTCGATCCCGTCCTGCTCGCCAAGACCGTTTCGCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTGGCCAC
CAATCTGCGCTACGGCAACCCCGACGCGAGCGACGAGGAGCTCTGGCACGCCCTTGAGGTCGCGCAGGCCAAGGAGTTCG
TCAGCAAGCTGGAAGGCGGCCTCGACGCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCGATCGCACGCACCCTGGTGCAGCGCCCGGAGATCTTCCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCTCGGCGCTCGGCCGCGAGACCGCCGAGGCCACGGTCGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGACAGGTCGTCGGGACCGGCCGCCATCACGAGCTGATGGCCGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCTGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.252

94.107

0.388