Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OG522_RS15850 Genome accession   NZ_CP109496
Coordinates   3463232..3465091 (-) Length   619 a.a.
NCBI ID   WP_329463620.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01431     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3458232..3470091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG522_RS15835 (OG522_15825) - 3459110..3460315 (-) 1206 WP_329463618.1 NAD(P)-binding domain-containing protein -
  OG522_RS15840 (OG522_15830) - 3460396..3461631 (-) 1236 WP_329467605.1 ATP-grasp domain-containing protein -
  OG522_RS15845 (OG522_15835) fahA 3461850..3463076 (+) 1227 WP_329463619.1 fumarylacetoacetase -
  OG522_RS15850 (OG522_15840) recQ 3463232..3465091 (-) 1860 WP_329463620.1 DNA helicase RecQ Machinery gene
  OG522_RS15855 (OG522_15845) nuoN 3465252..3466904 (-) 1653 WP_329463621.1 NADH-quinone oxidoreductase subunit NuoN -
  OG522_RS15860 (OG522_15850) - 3466901..3468499 (-) 1599 WP_329463622.1 NADH-quinone oxidoreductase subunit M -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67192.35 Da        Isoelectric Point: 5.9566

>NTDB_id=677805 OG522_RS15850 WP_329463620.1 3463232..3465091(-) (recQ) [Streptomyces sp. NBC_01431]
MIETGGGTQTVASESEARQTLHRIFGYESFRGAQGEVIEHVVAGGDAVVLMPTGGGKSLCYQIPALVRPGTGVVVSPLIA
LMQDQVDALRALGVRAGFINSTQDFEERRTVEAELLAGELDLLYLAPERLRVEATLDLLSRAKISVFAIDEAHCVAQWGH
DFRPDYLALSLLGERWPDVPRIALTATATGATHREITQRLGMPDARHFVASFDRPNIQYRIVPKSDPKKQLLSFLKEEHD
GDAGIVYCLSRASVEKTAQYLSDHGVQAVPYHAGLDSGTRAVNQSRFLREDGLVVVATIAFGMGIDKPDVRFVAHLDLPK
SVEGYYQETGRAGRDGLPSTAWMAYGLQDVVQQRKLIQGGEGDEAFRRRAAAHLDAMLALCETATCRRAQLLGYFGQEAS
DANCGNCDTCLTPPQTWDGTVAAQKALSTVVRLQRERGQKFGAGQIIDILLGRRTAKIIQFDHDALSVFGIGEELSEAQW
RGVVRQLLAQGLLAVEGEYGTLVLTEPSGEVLGGRREVRMRKEPEKPVRAPRSSSGKKAAVADLPEDAVAVFEALRAWRA
AQAKEGGVPAYVIFHDATLREIATVRPGSMEELGTIGGVGENKRAKYGEGVLSVLAELE

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=677805 OG522_RS15850 WP_329463620.1 3463232..3465091(-) (recQ) [Streptomyces sp. NBC_01431]
ATGATCGAGACGGGCGGCGGGACGCAGACGGTGGCCTCGGAGAGCGAGGCCCGACAGACGCTGCACCGCATCTTCGGGTA
CGAGAGCTTCCGCGGCGCCCAGGGCGAGGTCATCGAGCACGTCGTGGCCGGCGGCGATGCCGTCGTGCTCATGCCGACCG
GCGGCGGAAAGTCCCTCTGCTACCAGATCCCCGCGCTCGTCAGACCCGGCACCGGTGTGGTGGTCTCCCCGCTCATCGCC
CTCATGCAGGACCAGGTGGACGCCCTGCGCGCGCTCGGCGTGCGGGCCGGGTTCATCAACTCCACGCAGGACTTCGAGGA
GCGCCGCACCGTGGAGGCCGAGCTGCTCGCGGGCGAGCTCGACCTGCTGTACCTGGCGCCCGAGCGGCTGCGCGTGGAGG
CCACCCTCGACCTGCTCTCCCGCGCCAAGATCTCCGTCTTCGCGATCGACGAGGCGCACTGCGTCGCCCAGTGGGGCCAC
GACTTCCGCCCCGACTACCTCGCCCTGTCCCTGCTCGGCGAGCGCTGGCCCGACGTGCCGCGCATCGCCCTCACCGCGAC
CGCCACCGGCGCCACCCACCGCGAGATCACCCAGCGCCTCGGGATGCCCGACGCCCGGCACTTCGTGGCGAGCTTCGACC
GGCCGAACATCCAGTACCGGATCGTGCCGAAGAGCGACCCGAAGAAGCAGCTGCTCAGCTTCCTCAAGGAGGAGCACGAC
GGGGACGCCGGAATCGTCTACTGCCTCTCGCGCGCCTCGGTCGAGAAGACCGCGCAGTACCTGAGCGACCACGGGGTGCA
GGCCGTGCCGTACCACGCGGGTCTCGACTCGGGGACGCGCGCCGTCAACCAGTCGCGCTTCCTGCGGGAGGACGGCCTGG
TGGTGGTCGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCGGACGTCCGCTTCGTGGCCCACCTCGATCTGCCCAAG
TCGGTCGAGGGCTACTACCAGGAGACCGGCCGCGCGGGCCGCGACGGGCTGCCCTCGACGGCGTGGATGGCGTACGGACT
CCAGGACGTGGTCCAGCAGCGGAAGCTGATCCAGGGCGGTGAGGGCGACGAGGCGTTCCGGCGCCGGGCGGCCGCGCATC
TGGACGCGATGCTCGCCCTCTGCGAGACGGCGACGTGCCGGCGGGCCCAGCTCCTCGGCTACTTCGGCCAGGAGGCTTCG
GACGCCAACTGCGGCAACTGCGACACGTGTCTGACCCCGCCGCAGACCTGGGACGGCACGGTGGCGGCACAGAAGGCGCT
CTCCACGGTCGTACGCCTCCAGCGTGAGCGGGGCCAGAAGTTCGGCGCGGGCCAGATCATCGACATCCTGCTCGGCCGCA
GGACCGCGAAGATCATCCAGTTCGACCATGACGCGCTGTCCGTCTTCGGTATCGGGGAGGAGCTGTCCGAGGCCCAATGG
CGGGGCGTGGTGCGGCAGTTGCTCGCGCAGGGGCTGCTGGCGGTGGAGGGGGAGTACGGGACGCTGGTCCTGACCGAGCC
GAGCGGGGAGGTGCTCGGGGGCCGACGGGAGGTCCGGATGCGCAAGGAGCCGGAGAAGCCGGTGCGGGCGCCGCGGAGTT
CCTCCGGCAAGAAGGCCGCGGTCGCTGATCTGCCCGAGGACGCGGTGGCGGTGTTCGAGGCGCTGCGGGCGTGGCGCGCG
GCCCAGGCCAAGGAGGGCGGGGTTCCCGCGTACGTGATCTTCCATGACGCGACGCTGCGGGAGATCGCGACGGTTCGGCC
GGGCTCGATGGAGGAGCTCGGCACGATTGGTGGCGTCGGCGAGAACAAGCGGGCGAAGTACGGGGAGGGTGTGCTGTCCG
TGCTGGCCGAGCTGGAGTAG

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(550-614)

Helicase conserved C-terminal domain (Helicase_C)

(229-335)

RQC domain (RQC)

(413-526)

RecQ zinc-binding (RecQ_Zn_bind)

(348-411)

DEAD/DEAH box helicase (DEAD)

(33-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.487

96.123

0.37