Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HH1059_RS00755 | Genome accession | NZ_AP017372 |
| Coordinates | 158517..159464 (-) | Length | 315 a.a. |
| NCBI ID | WP_096407182.1 | Uniprot ID | A0A0X8X722 |
| Organism | Halorhodospira halochloris strain DSM 1059 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 153517..164464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HH1059_RS00725 (HH1059_01470) | rpmB | 154341..154577 (+) | 237 | WP_096407169.1 | 50S ribosomal protein L28 | - |
| HH1059_RS00730 (HH1059_01480) | rpmG | 154577..154747 (+) | 171 | WP_096407171.1 | 50S ribosomal protein L33 | - |
| HH1059_RS00735 (HH1059_01490) | mutM | 154785..155603 (+) | 819 | WP_096410271.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
| HH1059_RS00740 (HH1059_01500) | rpoH | 155709..156578 (-) | 870 | WP_096407174.1 | RNA polymerase sigma factor RpoH | - |
| HH1059_RS00745 (HH1059_01510) | ftsX | 156767..157840 (-) | 1074 | WP_096407177.1 | permease-like cell division protein FtsX | - |
| HH1059_RS00750 (HH1059_01520) | ftsE | 157840..158520 (-) | 681 | WP_096407179.1 | cell division ATP-binding protein FtsE | - |
| HH1059_RS00755 (HH1059_01530) | pilA | 158517..159464 (-) | 948 | WP_096407182.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| HH1059_RS00760 (HH1059_01540) | rsmD | 159739..160308 (+) | 570 | WP_096407185.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| HH1059_RS00765 (HH1059_01550) | coaD | 160324..160818 (+) | 495 | WP_096407187.1 | pantetheine-phosphate adenylyltransferase | - |
| HH1059_RS00770 (HH1059_01560) | radC | 160940..161614 (-) | 675 | WP_096407190.1 | RadC family protein | - |
| HH1059_RS00775 (HH1059_01570) | - | 161753..162133 (+) | 381 | WP_096407193.1 | MAPEG family protein | - |
| HH1059_RS00780 (HH1059_01580) | - | 162145..163413 (+) | 1269 | WP_096407195.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase | - |
| HH1059_RS00785 (HH1059_01590) | dut | 163437..163898 (+) | 462 | WP_096407198.1 | dUTP diphosphatase | - |
Sequence
Protein
Download Length: 315 a.a. Molecular weight: 33843.45 Da Isoelectric Point: 5.3092
>NTDB_id=67780 HH1059_RS00755 WP_096407182.1 158517..159464(-) (pilA) [Halorhodospira halochloris strain DSM 1059]
MSDDKKSGERRGLMGRLRNGLKRTRSGLTEGLANVFVGRKRLDDEMLEELETRLLSADMGIEAAQTVLDGLIEKLGRSEL
RDGSVVLEALQDEIAKVLKPVEQPLQIDLSRQPFVILTVGVNGAGKTTTIGKLASRYQQQGYSVMIAAGDTFRAAAVEQL
KEWGEQINCPVVAQATGADSASVVYDAYEAARARGVDILIADTAGRLHTQGNLMEELRKIRRVLSRQDSSSPHETLLVLD
GGNGQNALAQAEKFGEAVNVSGLAVTKLDGTARGGVLLALAQRLQVPVRYVGVGEGVDDLRTFNAKEFATALASE
MSDDKKSGERRGLMGRLRNGLKRTRSGLTEGLANVFVGRKRLDDEMLEELETRLLSADMGIEAAQTVLDGLIEKLGRSEL
RDGSVVLEALQDEIAKVLKPVEQPLQIDLSRQPFVILTVGVNGAGKTTTIGKLASRYQQQGYSVMIAAGDTFRAAAVEQL
KEWGEQINCPVVAQATGADSASVVYDAYEAARARGVDILIADTAGRLHTQGNLMEELRKIRRVLSRQDSSSPHETLLVLD
GGNGQNALAQAEKFGEAVNVSGLAVTKLDGTARGGVLLALAQRLQVPVRYVGVGEGVDDLRTFNAKEFATALASE
Nucleotide
Download Length: 948 bp
>NTDB_id=67780 HH1059_RS00755 WP_096407182.1 158517..159464(-) (pilA) [Halorhodospira halochloris strain DSM 1059]
ATGAGCGATGACAAGAAAAGCGGAGAACGTCGCGGCCTAATGGGCCGCTTGCGTAATGGCCTCAAGCGCACTCGCAGCGG
CCTAACCGAGGGGTTGGCTAATGTCTTTGTCGGCCGTAAGCGCCTCGACGATGAGATGCTGGAGGAACTGGAGACGCGAC
TCCTATCGGCCGACATGGGGATTGAAGCTGCCCAAACCGTTCTTGATGGCCTAATCGAAAAGCTAGGTCGTTCTGAGCTG
CGGGATGGTAGCGTTGTACTCGAAGCCCTGCAAGATGAGATCGCTAAGGTTTTAAAACCGGTCGAACAGCCGCTCCAGAT
TGACCTAAGTCGGCAACCATTCGTCATCCTAACCGTAGGTGTAAATGGTGCCGGAAAGACCACGACCATCGGCAAACTTG
CTTCCCGCTACCAGCAACAAGGTTACTCGGTGATGATCGCCGCCGGCGACACCTTCCGCGCAGCGGCCGTTGAACAGCTC
AAAGAGTGGGGTGAACAGATCAATTGCCCGGTGGTGGCGCAAGCAACTGGAGCCGACTCGGCATCGGTAGTCTACGATGC
CTATGAGGCGGCGCGCGCTCGCGGCGTCGACATTCTAATCGCCGACACTGCCGGTCGTTTGCATACCCAGGGCAACCTTA
TGGAGGAGCTGCGCAAGATTCGCCGCGTACTTTCCCGCCAGGACTCAAGCTCGCCGCACGAGACCCTGCTAGTGCTTGAC
GGCGGTAATGGCCAAAATGCCCTCGCCCAGGCTGAAAAATTCGGTGAGGCGGTCAATGTCAGCGGCCTCGCTGTGACTAA
GCTGGACGGCACGGCTCGAGGCGGGGTCTTGCTGGCACTAGCCCAACGCCTCCAAGTACCGGTACGCTACGTTGGAGTCG
GCGAAGGTGTCGACGACTTGCGCACATTCAACGCCAAGGAGTTTGCCACGGCACTAGCCTCGGAATGA
ATGAGCGATGACAAGAAAAGCGGAGAACGTCGCGGCCTAATGGGCCGCTTGCGTAATGGCCTCAAGCGCACTCGCAGCGG
CCTAACCGAGGGGTTGGCTAATGTCTTTGTCGGCCGTAAGCGCCTCGACGATGAGATGCTGGAGGAACTGGAGACGCGAC
TCCTATCGGCCGACATGGGGATTGAAGCTGCCCAAACCGTTCTTGATGGCCTAATCGAAAAGCTAGGTCGTTCTGAGCTG
CGGGATGGTAGCGTTGTACTCGAAGCCCTGCAAGATGAGATCGCTAAGGTTTTAAAACCGGTCGAACAGCCGCTCCAGAT
TGACCTAAGTCGGCAACCATTCGTCATCCTAACCGTAGGTGTAAATGGTGCCGGAAAGACCACGACCATCGGCAAACTTG
CTTCCCGCTACCAGCAACAAGGTTACTCGGTGATGATCGCCGCCGGCGACACCTTCCGCGCAGCGGCCGTTGAACAGCTC
AAAGAGTGGGGTGAACAGATCAATTGCCCGGTGGTGGCGCAAGCAACTGGAGCCGACTCGGCATCGGTAGTCTACGATGC
CTATGAGGCGGCGCGCGCTCGCGGCGTCGACATTCTAATCGCCGACACTGCCGGTCGTTTGCATACCCAGGGCAACCTTA
TGGAGGAGCTGCGCAAGATTCGCCGCGTACTTTCCCGCCAGGACTCAAGCTCGCCGCACGAGACCCTGCTAGTGCTTGAC
GGCGGTAATGGCCAAAATGCCCTCGCCCAGGCTGAAAAATTCGGTGAGGCGGTCAATGTCAGCGGCCTCGCTGTGACTAA
GCTGGACGGCACGGCTCGAGGCGGGGTCTTGCTGGCACTAGCCCAACGCCTCCAAGTACCGGTACGCTACGTTGGAGTCG
GCGAAGGTGTCGACGACTTGCGCACATTCAACGCCAAGGAGTTTGCCACGGCACTAGCCTCGGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50 |
96.508 |
0.483 |