Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG522_RS10220 Genome accession   NZ_CP109496
Coordinates   2228321..2229112 (+) Length   263 a.a.
NCBI ID   WP_329462641.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01431     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223321..2234112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG522_RS10205 (OG522_10200) - 2223407..2223937 (+) 531 WP_329462638.1 TerD family protein -
  OG522_RS10210 (OG522_10205) - 2224189..2227089 (-) 2901 WP_329462639.1 vitamin B12-dependent ribonucleotide reductase -
  OG522_RS10215 (OG522_10210) nrdR 2227244..2227765 (-) 522 WP_329462640.1 transcriptional regulator NrdR -
  OG522_RS10220 (OG522_10215) dinR/lexA 2228321..2229112 (+) 792 WP_329462641.1 transcriptional repressor LexA Regulator
  OG522_RS10225 (OG522_10220) - 2229288..2231258 (-) 1971 WP_329462642.1 ATP-dependent DNA helicase -
  OG522_RS10230 (OG522_10225) - 2231296..2233209 (-) 1914 WP_329462643.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28497.22 Da        Isoelectric Point: 7.4238

>NTDB_id=677783 OG522_RS10220 WP_329462641.1 2228321..2229112(+) (dinR/lexA) [Streptomyces sp. NBC_01431]
MTTTADSATITAQDRSQTRLEPVHAMNDAVTNQGAEASRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHNA
AYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=677783 OG522_RS10220 WP_329462641.1 2228321..2229112(+) (dinR/lexA) [Streptomyces sp. NBC_01431]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGACCCGACTTGAGCCGGTGCATGCCATGAA
TGACGCAGTCACGAACCAGGGAGCGGAGGCCTCACGGCCTGCCCGCTCGCTGCCCGGCCGACCTCCAGGGATCAGGGCGG
ACAGCTCTGGGCTCACCGACCGGCAGCGGCGGGTCATCGAAGTCATCCGGGACTCCGTGCAGCGGCGCGGTTACCCGCCG
TCGATGCGGGAGATCGGTCAAGCAGTCGGCCTCTCCAGCACCTCGTCCGTCGCCCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGTCGCGACCCGCACCGGCCGCGCGCGTACGAGGTACGCGGCTCCGACCAGCCGAGCAGTCAGCCCACCG
ACACCACCGGCAAGCCCGCCGCCTCATATGTGCCGCTCGTCGGACGCATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAA
TCGGTCGAGGACGTCTTCCCCCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGAGACTC
GATGATCGAAGCCGCCATCTGTGACGGCGACTGGGTCACGGTTCGCCGCCAGCCCGTAGCCGAGAACGGTGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACAACCACATCTGGCTGCTTCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGATGCGACCATTCTCGGCAAGGTCGTGGCGGTGCTCCGGCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

47.17

80.608

0.38