Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG769_RS25005 Genome accession   NZ_CP109492
Coordinates   5744535..5746466 (-) Length   643 a.a.
NCBI ID   WP_329198868.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01435     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5739535..5751466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG769_RS24990 (OG769_24970) - 5739951..5741210 (+) 1260 WP_329198863.1 FAD-dependent oxidoreductase -
  OG769_RS24995 (OG769_24975) dnaG 5741279..5743186 (+) 1908 WP_093542745.1 DNA primase -
  OG769_RS25000 (OG769_24980) - 5743378..5744472 (+) 1095 WP_329198866.1 RNA polymerase sigma factor -
  OG769_RS25005 (OG769_24985) rcrQ 5744535..5746466 (-) 1932 WP_329198868.1 ABC transporter ATP-binding protein Regulator
  OG769_RS25010 (OG769_24990) rcrP 5746466..5748199 (-) 1734 WP_329198870.1 ABC transporter ATP-binding protein Regulator
  OG769_RS25015 (OG769_24995) - 5748368..5749813 (-) 1446 WP_093542752.1 FGGY family carbohydrate kinase -
  OG769_RS25020 (OG769_25000) - 5749887..5750192 (-) 306 WP_329202731.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69386.77 Da        Isoelectric Point: 5.3197

>NTDB_id=677754 OG769_RS25005 WP_329198868.1 5744535..5746466(-) (rcrQ) [Streptomyces sp. NBC_01435]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFAAEKTALYATLAASVLSVALSVVGPKILGRATDLIFAGVVGRQMPQGT
TKEQAVEGLRKSNSGLADMLSGVDFIPGHGIDFGAVGDVLLVALAVYVGAGLLMLVATRLSIRIINRIIFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWVSPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNEALYEAGFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGADPAPGERERPEELRGSVSL
EKVSFRYAADKPLIEDLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVTKMSRDELRQGIGMVLQD
TWLFGGSIADNIAYGASREVTREEIEEAAKAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLAAEGAYARLYSAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=677754 OG769_RS25005 WP_329198868.1 5744535..5746466(-) (rcrQ) [Streptomyces sp. NBC_01435]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGCTGAAGCGCTTCGCGGCGGAGAAGACCGCCCTGTACGCGACGCTGGCGGCCTCGGTGCTGAGCGTCGCCCTGTCGG
TGGTCGGGCCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGCCGGGGTCGTCGGCCGGCAGATGCCGCAGGGGACG
ACCAAGGAACAAGCCGTCGAGGGGCTGCGCAAGAGCAACAGCGGCCTCGCCGACATGCTCTCCGGGGTGGACTTCATCCC
GGGTCACGGCATCGACTTCGGTGCGGTGGGCGACGTACTGCTGGTGGCGCTGGCGGTCTACGTCGGCGCGGGCCTGCTGA
TGCTGGTGGCGACCCGGCTGTCGATCCGGATCATCAACCGGATCATCTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCTCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGGTCATGATGTTCT
GGGTCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTCTCGGTGGTCGTGGCCACCAAGGTCGGCAAGCGT
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGTT
TCAGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTGAACTATGTGCTGATCGCCGTC
GTGGGTGGTCTGCGGGTCGCTTCGGGGTCGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAACAGGGCGCCGACCCCGCGCCCGGTGAGCGCGAGCGTCCCGAGGAGCTGCGGGGCAGCGTCTCGCTG
GAGAAGGTGTCGTTCCGCTACGCCGCGGACAAGCCGCTCATCGAGGACCTCTCGCTGAACGTCGAGCCCGGTCACACGGT
CGCGATCGTCGGGCCGACGGGCGCCGGCAAGACCACGCTCGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCC
GGATCACGCTGGACGGGGTCGATGTGACGAAGATGTCGCGCGACGAGCTGCGGCAGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGTTCCATCGCGGACAACATCGCGTACGGGGCGTCGCGCGAGGTCACCCGCGAGGAGATCGAGGA
GGCGGCGAAGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGCT
CCGGCGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGAC
GAGGCGACCAGCTCCGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTGGCCCACGGCCGTACGAG
CTTTGTGATCGCGCACCGGCTCTCCACCATCCGGGATGCCGACGTCATCCTGGTGATGGAGAACGGCTCGATCGTCGAAC
AGGGCACGCACGAGGAGCTGTTGGCCGCCGAGGGCGCCTACGCCCGGCTGTACTCGGCGCAGTTCGCGCAGGCGGTCGCC
GAAGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40

92.535

0.37