Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG769_RS19995 Genome accession   NZ_CP109492
Coordinates   4583740..4585152 (-) Length   470 a.a.
NCBI ID   WP_329197352.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01435     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4578740..4590152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG769_RS19970 (OG769_19945) - 4578863..4579477 (-) 615 WP_093547392.1 SigE family RNA polymerase sigma factor -
  OG769_RS19975 (OG769_19950) - 4579683..4580585 (-) 903 WP_093547390.1 A/G-specific adenine glycosylase -
  OG769_RS19980 (OG769_19955) - 4580731..4581378 (-) 648 WP_329197348.1 phosphatase PAP2 family protein -
  OG769_RS19985 (OG769_19960) - 4581551..4582369 (+) 819 WP_329197350.1 hypothetical protein -
  OG769_RS19990 (OG769_19965) disA 4582535..4583659 (-) 1125 WP_093547386.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG769_RS19995 (OG769_19970) radA/sms 4583740..4585152 (-) 1413 WP_329197352.1 DNA repair protein RadA Machinery gene
  OG769_RS20000 (OG769_19975) - 4585417..4587318 (+) 1902 WP_329197355.1 hypothetical protein -
  OG769_RS20005 (OG769_19980) - 4587461..4588321 (-) 861 WP_329197357.1 hypothetical protein -
  OG769_RS20010 (OG769_19985) - 4588362..4589309 (+) 948 WP_093547378.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49475.58 Da        Isoelectric Point: 8.4930

>NTDB_id=677746 OG769_RS19995 WP_329197352.1 4583740..4585152(-) (radA/sms) [Streptomyces sp. NBC_01435]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGSPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEDHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAFRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEEGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=677746 OG769_RS19995 WP_329197352.1 4583740..4585152(-) (radA/sms) [Streptomyces sp. NBC_01435]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCTCCCCCGCCGTGCGGACCACCGCGGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGCCAGGCCACCGCCCGCTCCACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGTCTCGTGCCGGGCGCCGTCGTGCTCCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTCGCCGCCAAGGCGGCGAGCGAGGACCACCGCACGCTCTATGTCACCGCCGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTGTACCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTCGACGCCGTCAAGCCCTCGCTCCTCATCCTCGACTCCGTACAGACCGTCGCCTCACCCGAGATCGATGG
GGCGCCGGGCGGCATGGCGCAGGTCAGGGAGGTCGCCGGGGCCCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCACGTCACCAAGGACGGAGCGATCGCCGGCCCGCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGCCTCCGGCTCGTACGGGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGACTCTTCCTCACCCGGCGCGACGAGCCCGTGC
CCGGCACCTGTCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTCGTCGCCGAGGTGCAGGCGCTGACGGTCGATTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGAGGGGTGAAGCTCTCCGAGCCCGCCGCCGACC
TCGCGGTCGCGCTGGCCCTGGCCAGCGCCGCGAGCGACACCCCCCTGCCGAAGAACCTGGTGGCGATCGGCGAAGTGGGC
CTCGCGGGCGAAGTCAGAAGGGTCACGGGGGTCCAGCGCAGGCTGGCCGAGGCGTTCCGCCTGGGCTTCACGCACGCGCT
GGTTCCTACCGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGACGCGCTGAGAGTCC
TCCCGCGCCGGTCTCGCGCACAGGCCCCCCAGGAGGAGGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

42.826

96.383

0.413
  radA Streptococcus pneumoniae D39

42.826

96.383

0.413
  radA Streptococcus pneumoniae R6

42.826

96.383

0.413
  radA Streptococcus pneumoniae TIGR4

42.826

96.383

0.413
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404