Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMF07_RS07575 Genome accession   NZ_CP095730
Coordinates   1507475..1508848 (-) Length   457 a.a.
NCBI ID   WP_187983956.1    Uniprot ID   -
Organism   Listeria innocua strain H0996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1502475..1513848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMF07_RS07550 (EWI68_07550) epsC 1502577..1503191 (-) 615 WP_003760085.1 serine O-acetyltransferase EpsC -
  QMF07_RS07555 (EWI68_07555) gltX 1503590..1505065 (-) 1476 WP_033533521.1 glutamate--tRNA ligase -
  QMF07_RS07560 (EWI68_07560) ispF 1505084..1505557 (-) 474 WP_003760080.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QMF07_RS07565 (EWI68_07565) ispD 1505550..1506248 (-) 699 WP_207578628.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QMF07_RS07570 (EWI68_07570) - 1506268..1507341 (-) 1074 WP_003770118.1 PIN/TRAM domain-containing protein -
  QMF07_RS07575 (EWI68_07575) radA 1507475..1508848 (-) 1374 WP_187983956.1 DNA repair protein RadA Machinery gene
  QMF07_RS07580 (EWI68_07580) - 1509003..1511465 (-) 2463 WP_003770116.1 ATP-dependent Clp protease ATP-binding subunit -
  QMF07_RS07585 (EWI68_07585) - 1511494..1512516 (-) 1023 WP_010990301.1 protein arginine kinase -
  QMF07_RS07590 (EWI68_07590) - 1512513..1513031 (-) 519 WP_003765052.1 UvrB/UvrC motif-containing protein -
  QMF07_RS07595 (EWI68_07595) - 1513044..1513502 (-) 459 WP_003760062.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49936.50 Da        Isoelectric Point: 7.0192

>NTDB_id=677746 QMF07_RS07575 WP_187983956.1 1507475..1508848(-) (radA) [Listeria innocua strain H0996]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETDLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKVPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=677746 QMF07_RS07575 WP_187983956.1 1507475..1508848(-) (radA) [Listeria innocua strain H0996]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAGGCGACTCCAATAACTCAGATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCTATGGTGCTTGTTGGCGGCGATCCTGGTATTGGTAAATCCACGCTTTT
ACTTCAAGTGTCGGCACAACTTACCCTTACTAATAAGAAAGTATTATATATCTCTGGGGAAGAATCAATTAAGCAAACAA
AACTTCGTGCGGAGCGGCTACAAGTTTCCGGTGATAATTTGTACGTTTATGCAGAAACTGATTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTTGTCATTGACTCTATTCAAACTGTTTATCACCCTGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACGGCTGCTTTAATGCGGATCGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGACCGCGTTTACTTGAACATATGGTAGATACAGTGCTTTATTTTGAA
GGAGAACGTCATCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAAATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAAGTTGCCAATCCATCTGAGGTGTTCTTAGAGGAACGTCTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACTCGTCCTGTGCTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGG
AATGCAAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCAGCTGGTGGAGTTAAATTGGATGAACCAGCAGTTGATTTGGCGGTAG
CTGTTAGTGTGGCTTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCCAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAGTACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

69.079

99.781

0.689
  radA Streptococcus mitis NCTC 12261

65.275

99.562

0.65
  radA Streptococcus pneumoniae D39

65.044

98.906

0.643
  radA Streptococcus pneumoniae TIGR4

65.044

98.906

0.643
  radA Streptococcus pneumoniae R6

65.044

98.906

0.643
  radA Streptococcus pneumoniae Rx1

65.044

98.906

0.643
  radA Streptococcus mitis SK321

64.823

98.906

0.641