Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QMF07_RS02090 Genome accession   NZ_CP095730
Coordinates   427823..429514 (-) Length   563 a.a.
NCBI ID   WP_207578524.1    Uniprot ID   -
Organism   Listeria innocua strain H0996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 422823..434514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMF07_RS02070 (EWI68_02070) - 423162..424157 (-) 996 WP_003762136.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  QMF07_RS02075 (EWI68_02075) lpdA 424182..425609 (-) 1428 WP_033533055.1 dihydrolipoyl dehydrogenase -
  QMF07_RS02080 (EWI68_02080) buk 425623..426690 (-) 1068 WP_010991519.1 butyrate kinase -
  QMF07_RS02085 (EWI68_02085) - 426827..427693 (-) 867 WP_185484173.1 phosphate acyltransferase -
  QMF07_RS02090 (EWI68_02090) recN 427823..429514 (-) 1692 WP_207578524.1 DNA repair protein RecN Machinery gene
  QMF07_RS02095 (EWI68_02095) argR 429537..429986 (-) 450 WP_003766793.1 transcriptional regulator ArgR -
  QMF07_RS02100 (EWI68_02100) - 430177..431001 (-) 825 WP_003771733.1 TlyA family RNA methyltransferase -
  QMF07_RS02105 (EWI68_02105) dxs 430998..432918 (-) 1921 Protein_394 1-deoxy-D-xylulose-5-phosphate synthase -
  QMF07_RS02110 (EWI68_02110) - 433083..433283 (-) 201 WP_003719639.1 cold-shock protein -
  QMF07_RS02115 (EWI68_02115) - 433482..434363 (-) 882 WP_003771729.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63598.35 Da        Isoelectric Point: 5.2644

>NTDB_id=677737 QMF07_RS02090 WP_207578524.1 427823..429514(-) (recN) [Listeria innocua strain H0996]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAATTLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=677737 QMF07_RS02090 WP_207578524.1 427823..429514(-) (recN) [Listeria innocua strain H0996]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAACTGCAAGGCTTATTTGCCCTAGCAGAAGATAATCTTGCCTGCCGTAATGCA
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGTATTAACGGAAAACTAGTAACTACGGTGTTGCTACGTCAAATCGGTTCTAAATTAATAGATATTCATAGTCAACATG
AACACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTTCTGATAAAATTAAACCCGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAGCGGCTCGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCAAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACAGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGTCAGATGGAAGCGGCTGCGAGTATTCATACTGATTATAAAGC
AGTTAGTGAAGCAATATCATCCAGTTACTATATGCTTGAAGACAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTAAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAACTGACGGATAGTGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTCACTGACATCCGCAAAAAAGCAG
CAACCACGTTAGAAAAACAAATTAAACAAGAATTAAATCAACTATATATGGAAAAAGCTATTTTCAGTGTTCACTTTGAG
TCTGACAAAACAGAATTAACGGAATCAGGCCAAGACAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAGCCGCTAAA
ACCACTTGCGAAAATCGCTTCTGGCGGTGAGTTATCACGAATGATGTTAGCGCTAAAAACCATTTTTTCAAGACATCAAG
GCATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTCGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCCAATCACCATTACTACAT
CACAAAAAAAGTGCAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATTAGCC
GTATGATTGCTGGGATAGAAGTGACTGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCTGAAAAAGTAAAA
CAAACTTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531