Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AS079_RS10265 Genome accession   NZ_CP095728
Coordinates   2069649..2071340 (-) Length   563 a.a.
NCBI ID   WP_003766795.1    Uniprot ID   A0AB73H4H6
Organism   Listeria innocua strain 2015L-6726     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064649..2076340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS079_RS10245 (AS079_10245) - 2064988..2065983 (-) 996 WP_033533054.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  AS079_RS10250 (AS079_10250) lpdA 2066008..2067435 (-) 1428 WP_033533055.1 dihydrolipoyl dehydrogenase -
  AS079_RS10255 (AS079_10255) buk 2067449..2068516 (-) 1068 WP_033533056.1 butyrate kinase -
  AS079_RS10260 (AS079_10260) - 2068653..2069519 (-) 867 WP_010991518.1 phosphate acyltransferase -
  AS079_RS10265 (AS079_10265) recN 2069649..2071340 (-) 1692 WP_003766795.1 DNA repair protein RecN Machinery gene
  AS079_RS10270 (AS079_10270) argR 2071363..2071812 (-) 450 WP_003766793.1 transcriptional regulator ArgR -
  AS079_RS10275 (AS079_10275) - 2072003..2072827 (-) 825 WP_003771733.1 TlyA family RNA methyltransferase -
  AS079_RS10280 (AS079_10280) dxs 2072824..2074744 (-) 1921 Protein_1971 1-deoxy-D-xylulose-5-phosphate synthase -
  AS079_RS10285 (AS079_10285) - 2074910..2075110 (-) 201 WP_003719639.1 cold-shock protein -
  AS079_RS10290 (AS079_10290) - 2075309..2076190 (-) 882 WP_003771729.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63582.35 Da        Isoelectric Point: 5.2644

>NTDB_id=677720 AS079_RS10265 WP_003766795.1 2069649..2071340(-) (recN) [Listeria innocua strain 2015L-6726]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAATTLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=677720 AS079_RS10265 WP_003766795.1 2069649..2071340(-) (recN) [Listeria innocua strain 2015L-6726]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAACTGCAAGGCTTATTTGCCCTAGCAGAAGATAATCTTGCCTGCCGTAATGCA
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGTATTAACGGAAAACTAGTAACTACGGTGTTGCTACGTCAAATCGGTTCTAAATTAATAGATATTCATAGTCAACATG
AACACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTGCTGATAAAATTAAACCCGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAGCGGCTCGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCAAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACAGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGCCAGATGGAAGCCGCTGCGAGTATTCATACTGATTATAAAGC
AGTTAGTGAAGCAATATCATCCAGTTACTATATGCTTGAAGACAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTGAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAACTGACGGATAGTGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCAACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTCACTGACATCCGCAAAAAAGCAG
CAACCACGTTAGAAAAACAAATTAAACAAGAATTAAATCAACTATATATGGAAAAAGCTATTTTCAGCGTTCACTTTGAG
TCTGACAAAACAGAATTAACGGAATCAGGCCAAGACAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAGCCGCTAAA
ACCACTTGCGAAAATCGCTTCTGGCGGTGAGTTATCACGAATGATGTTAGCGTTAAAAACCATTTTTTCAAGACATCAAG
GCATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTCGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCCAATCACCATTACTACAT
CACAAAAAAAGTGCAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATCAGCC
GTATGATTGCTGGGATAGAAGTGACTGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCTGAAAAAGTAAAA
CAAACCTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531