Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AS079_RS01725 Genome accession   NZ_CP095728
Coordinates   340010..341383 (-) Length   457 a.a.
NCBI ID   WP_003760072.1    Uniprot ID   Q92F42
Organism   Listeria innocua strain 2015L-6726     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335010..346383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS079_RS01700 (AS079_01700) epsC 335112..335726 (-) 615 WP_003760085.1 serine O-acetyltransferase EpsC -
  AS079_RS01705 (AS079_01705) gltX 336125..337600 (-) 1476 WP_033533521.1 glutamate--tRNA ligase -
  AS079_RS01710 (AS079_01710) ispF 337619..338092 (-) 474 WP_033533522.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AS079_RS01715 (AS079_01715) ispD 338085..338783 (-) 699 WP_033533523.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AS079_RS01720 (AS079_01720) - 338803..339876 (-) 1074 WP_003770118.1 PIN/TRAM domain-containing protein -
  AS079_RS01725 (AS079_01725) radA 340010..341383 (-) 1374 WP_003760072.1 DNA repair protein RadA Machinery gene
  AS079_RS01730 (AS079_01730) - 341538..344000 (-) 2463 WP_248606139.1 ATP-dependent Clp protease ATP-binding subunit -
  AS079_RS01735 (AS079_01735) - 344029..345051 (-) 1023 WP_010990301.1 protein arginine kinase -
  AS079_RS01740 (AS079_01740) - 345048..345566 (-) 519 WP_003760064.1 UvrB/UvrC motif-containing protein -
  AS079_RS01745 (AS079_01745) - 345579..346037 (-) 459 WP_003760062.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49935.52 Da        Isoelectric Point: 7.3272

>NTDB_id=677690 AS079_RS01725 WP_003760072.1 340010..341383(-) (radA) [Listeria innocua strain 2015L-6726]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKVPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=677690 AS079_RS01725 WP_003760072.1 340010..341383(-) (radA) [Listeria innocua strain 2015L-6726]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAGGCGACTCCAATAACTCAGATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCCATGGTGCTTGTTGGTGGCGATCCTGGTATTGGTAAATCCACTCTTTT
ACTACAAGTGTCGGCACAACTTACACTTACTAATAAGAAAGTATTATATATTTCCGGGGAAGAATCAATTAAGCAAACAA
AACTTCGTGCGGAGCGGCTGCAAGTTTCCGGTGATAATTTGTATGTTTATGCAGAAACTAACTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTTGTCATTGACTCTATTCAAACTGTTTATCACCCTGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACGGCTGCTTTAATGCGGATCGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGACCGCGTTTACTTGAACATATGGTAGATACAGTGCTTTATTTTGAA
GGAGAACGTCATCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAAATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAAGTTGCCAATCCATCTGAGGTGTTCTTAGAGGAACGTCTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACTCGTCCTGTGCTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGG
AATGCAAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCAGCTGGTGGAGTTAAATTGGATGAACCAGCAGTTGATTTGGCGGTAG
CTGTTAGTGTGGCTTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCCAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAGTACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q92F42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643