Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB346_RS12230 Genome accession   NZ_CP095727
Coordinates   2391344..2392717 (-) Length   457 a.a.
NCBI ID   WP_003765058.1    Uniprot ID   -
Organism   Listeria innocua strain 2010L-1951     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2386344..2397717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB346_RS12210 (AB346_12210) gltX 2387459..2388934 (-) 1476 WP_207577144.1 glutamate--tRNA ligase -
  AB346_RS12215 (AB346_12215) ispF 2388953..2389426 (-) 474 WP_003765064.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AB346_RS12220 (AB346_12220) ispD 2389419..2390117 (-) 699 WP_187123438.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB346_RS12225 (AB346_12225) - 2390137..2391210 (-) 1074 WP_031649065.1 PIN/TRAM domain-containing protein -
  AB346_RS12230 (AB346_12230) radA 2391344..2392717 (-) 1374 WP_003765058.1 DNA repair protein RadA Machinery gene
  AB346_RS12235 (AB346_12235) - 2392874..2395336 (-) 2463 WP_207577143.1 ATP-dependent Clp protease ATP-binding subunit -
  AB346_RS12240 (AB346_12240) - 2395365..2396387 (-) 1023 WP_187123440.1 protein arginine kinase -
  AB346_RS12245 (AB346_12245) - 2396384..2396902 (-) 519 WP_003765052.1 UvrB/UvrC motif-containing protein -
  AB346_RS12250 (AB346_12250) - 2396915..2397373 (-) 459 WP_003760062.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49949.54 Da        Isoelectric Point: 7.3272

>NTDB_id=677679 AB346_RS12230 WP_003765058.1 2391344..2392717(-) (radA) [Listeria innocua strain 2010L-1951]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=677679 AB346_RS12230 WP_003765058.1 2391344..2392717(-) (radA) [Listeria innocua strain 2010L-1951]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCGAAGGCGACTCCAATAACTCAAATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCTATGGTGCTTGTTGGCGGCGATCCTGGTATTGGTAAATCCACGCTTTT
ACTTCAAGTGTCGGCACAACTTACACTTACTAATAAGAAAGTATTGTATATTTCCGGGGAAGAATCGATTAAGCAAACGA
AACTTCGTGCGGAGCGGCTGCAAGTTTCCGGTGATAATTTGTACGTTTATGCAGAAACTAATTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTCGTCATTGACTCTATTCAAACTGTTTATCATCCAGATGTCACAAGTGCTGC
GGGAAGTGTGTCACAGGTTCGAGAATGTACGGCTGCTTTAATGCGGATTGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGTCCGCGTTTACTTGAACATATGGTGGATACAGTGCTTTATTTTGAA
GGAGAACGTCACCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAGATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAGGTTGCTAATCCATCTGAGGTATTCTTAGAGGAACGTTTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACACGCCCTGTACTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGA
AATGCAAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCGGCTGGCGGGGTTAAATTAGATGAACCAGCAGTTGATTTGGCTGTAG
CAGTTAGTGTGGCCTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCAAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643