Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG281_RS22920 Genome accession   NZ_CP109488
Coordinates   5089197..5090930 (-) Length   577 a.a.
NCBI ID   WP_371773270.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01438     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5084197..5095930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG281_RS22910 (OG281_22925) - 5086026..5087219 (+) 1194 WP_371631619.1 RNA polymerase sigma factor -
  OG281_RS22915 (OG281_22930) rcrQ 5087266..5089197 (-) 1932 WP_371773269.1 ABC transporter ATP-binding protein Regulator
  OG281_RS22920 (OG281_22935) rcrP 5089197..5090930 (-) 1734 WP_371773270.1 ABC transporter ATP-binding protein Regulator
  OG281_RS22925 (OG281_22940) - 5091098..5092543 (-) 1446 WP_371773271.1 FGGY family carbohydrate kinase -
  OG281_RS22930 (OG281_22945) - 5092637..5092936 (-) 300 WP_073735922.1 hypothetical protein -
  OG281_RS22950 (OG281_22965) - 5095164..5095703 (-) 540 WP_371773272.1 VUT family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62560.62 Da        Isoelectric Point: 5.5411

>NTDB_id=677673 OG281_RS22920 WP_371773270.1 5089197..5090930(-) (rcrP) [Streptomyces sp. NBC_01438]
MLIKLLRTYLGPYKKPIALLVVFQLLQTSAALYLPTLNADIIDNGVVKGDTGYILQYGGAMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQIQMLILMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLETDSSVVP
PVEPVTELRAHGHLEIRGADFRYPGAEASVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLAPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQQPEIYLFDDSFSALDYTTDAALRAALLRETAAATVVIVAQRVSTIRDADRILVMDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=677673 OG281_RS22920 WP_371773270.1 5089197..5090930(-) (rcrP) [Streptomyces sp. NBC_01438]
GTGCTCATAAAACTCCTGCGGACCTATCTCGGTCCGTACAAGAAGCCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTCCA
GACCTCCGCCGCCCTCTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTCAAGGGCGACACGGGTTACA
TCCTGCAGTACGGCGGCGCCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGTACCGCGTCCGCGCTCGGCCGCGATGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGCTCGG
CCGGTTCGGCGCGCCTTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGATCCAGATGCTGATCCTGATGACGTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTCCTCGCGGTGGTGCCGGTCCTCGGGATCGCGGTGAGCCTGATCGTGAAGCGGATGCGTCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGGAGAAGCGTTTCCGGGGCGCCAACACCGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCTCGTACCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCCAGGAGGTCCTGGAGACCGATTCCAGCGTGGTGCCG
CCGGTCGAGCCGGTGACCGAACTGCGCGCCCACGGGCATCTGGAGATCCGCGGCGCCGACTTCCGCTACCCCGGCGCCGA
GGCGTCGGTGCTGCGGTCCGTGGACCTGGTGGCCCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACGCTGGCTCCGGCACTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCCGGAACGGTCGCGAC
CAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCGAGGGCCTGGAACACGGTCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
TCGATCGCCCGGACGCTGGTCCAGCAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACACCACGGA
CGCCGCGCTGCGCGCGGCGCTGCTGCGGGAGACCGCGGCCGCGACCGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGATGGACGAGGGCCGGGTGGTCGGCTCCGGCAGCCATCACGAGCTGATGGAAGGCAAT
GAAACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.727

95.321

0.388