Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG281_RS22915 Genome accession   NZ_CP109488
Coordinates   5087266..5089197 (-) Length   643 a.a.
NCBI ID   WP_371773269.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01438     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5082266..5094197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG281_RS22905 (OG281_22920) dnaG 5083997..5085916 (+) 1920 WP_371773268.1 DNA primase -
  OG281_RS22910 (OG281_22925) - 5086026..5087219 (+) 1194 WP_371631619.1 RNA polymerase sigma factor -
  OG281_RS22915 (OG281_22930) rcrQ 5087266..5089197 (-) 1932 WP_371773269.1 ABC transporter ATP-binding protein Regulator
  OG281_RS22920 (OG281_22935) rcrP 5089197..5090930 (-) 1734 WP_371773270.1 ABC transporter ATP-binding protein Regulator
  OG281_RS22925 (OG281_22940) - 5091098..5092543 (-) 1446 WP_371773271.1 FGGY family carbohydrate kinase -
  OG281_RS22930 (OG281_22945) - 5092637..5092936 (-) 300 WP_073735922.1 hypothetical protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69241.64 Da        Isoelectric Point: 5.2951

>NTDB_id=677672 OG281_RS22915 WP_371773269.1 5087266..5089197(-) (rcrQ) [Streptomyces sp. NBC_01438]
MAGPGGRMMAGGAPTERSMDFKGSTKRLLKRFAKERTTLYVMLVAGALSVALSVVGPKILGKATDLVFAGVIGRQMPEGT
SKEQALAGLHKTNSGLADMLSKVDFTPGKGMDFDAIGHVLLAALITYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSVLTIIGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
IGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQDADPAKGEGAHPEELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVATMSRADLRSGIGMVLQD
TWLFGGTIAENIAYGASGEVGREQVEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAQLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAADGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=677672 OG281_RS22915 WP_371773269.1 5087266..5089197(-) (rcrQ) [Streptomyces sp. NBC_01438]
ATGGCTGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGCTCCACGAAGCG
GCTGCTGAAGCGCTTCGCCAAGGAGCGGACCACGCTGTACGTGATGCTGGTGGCCGGCGCGCTGAGCGTGGCGCTCTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCAGATGCCGGAGGGGACG
AGCAAGGAGCAGGCCCTCGCGGGACTGCACAAGACCAACAGCGGCCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGCAAGGGCATGGACTTCGACGCGATCGGCCATGTGCTGCTGGCCGCGCTGATCACGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTACCGCTGTCGTACTTCGACCGTGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCACAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTCGTCGCGCTCGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACCAAGGTGGGCAAGCGC
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGACACAC
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCCGTC
ATCGGCGGGCTGCGGGTGGCCTCCGGCGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCCCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCGTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCAGAGGAGCAGGACGCCGACCCGGCGAAGGGCGAGGGCGCGCACCCGGAGGAGCTGCGCGGCAGCGTCTCGCTG
GAGAACGTCTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGTGTCGAGCCGGGTCACACGGT
CGCGATCGTCGGCCCGACCGGTGCGGGCAAGACGACTCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCC
GGATCGCCCTGGACGGGGTGGACGTCGCGACGATGTCCCGCGCCGACCTGCGGTCCGGAATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGCGCCTCGGGCGAGGTCGGCCGGGAGCAGGTCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGCA
CCGGCGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTGGAC
GAGGCGACCAGCTCCGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCGCAGCTCGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTCGTGATGGAGAACGGCTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGCGGCGGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCACAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(42-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.876

85.07

0.373