Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG281_RS04585 Genome accession   NZ_CP109488
Coordinates   1061121..1061915 (+) Length   264 a.a.
NCBI ID   WP_024489034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01438     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056121..1066915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG281_RS04570 (OG281_04575) - 1056370..1056906 (+) 537 WP_371775793.1 TerD family protein -
  OG281_RS04575 (OG281_04580) - 1057010..1059916 (-) 2907 WP_371775794.1 vitamin B12-dependent ribonucleotide reductase -
  OG281_RS04580 (OG281_04585) nrdR 1060076..1060588 (-) 513 WP_073737717.1 transcriptional regulator NrdR -
  OG281_RS04585 (OG281_04590) dinR/lexA 1061121..1061915 (+) 795 WP_024489034.1 transcriptional repressor LexA Regulator
  OG281_RS04590 (OG281_04595) - 1061999..1063969 (-) 1971 WP_371775795.1 ATP-dependent DNA helicase -
  OG281_RS04595 (OG281_04600) - 1064020..1065999 (-) 1980 WP_371775796.1 IucA/IucC family siderophore biosynthesis protein -
  OG281_RS04600 (OG281_04605) - 1066060..1066830 (-) 771 WP_371775797.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28651.39 Da        Isoelectric Point: 7.4242

>NTDB_id=677626 OG281_RS04585 WP_024489034.1 1061121..1061915(+) (dinR/lexA) [Streptomyces sp. NBC_01438]
MTTTADSAIITAQDRSQSRREPVHAMNDSATNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=677626 OG281_RS04585 WP_024489034.1 1061121..1061915(+) (dinR/lexA) [Streptomyces sp. NBC_01438]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACGTGAGCCGGTGCATGCCATGAA
TGACTCAGCCACGAACACGGAGGGGCCCGAGCCCGCGCGCCCAGCGCGCTCGCTTCCCGGGCGACCTCCTGGAATCCGGG
CGGACAGCTCAGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTACAGCGGCGGGGATATCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGTACGTCCTCCGTCGCGCATCAGCTCATGGCTCTGGAACG
CAAGGGGTTCCTGCGCCGCGACCCCCACCGACCCCGGGCGTACGAGGTTCGCGGTTCGGACCAGCCCAGCACGCAGCCCA
CGGACACCACCGGGAAGCCCGCGGCTTCGTACGTTCCGTTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCCGAG
GAGTCCGTCGAAGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGCGACGGGGACTGGGTCACGGTCCGGCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCGGCGATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTCTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTAGCGGTGCTGCGGAGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371