Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB348_RS09675 Genome accession   NZ_CP095724
Coordinates   1923320..1924693 (+) Length   457 a.a.
NCBI ID   WP_003765058.1    Uniprot ID   -
Organism   Listeria innocua strain F6217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918320..1929693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB348_RS09655 (AB348_09655) - 1918667..1919125 (+) 459 WP_003760062.1 CtsR family transcriptional regulator -
  AB348_RS09660 (AB348_09660) - 1919138..1919656 (+) 519 WP_003765052.1 UvrB/UvrC motif-containing protein -
  AB348_RS09665 (AB348_09665) - 1919653..1920675 (+) 1023 WP_187123440.1 protein arginine kinase -
  AB348_RS09670 (AB348_09670) - 1920704..1923166 (+) 2463 WP_247379058.1 ATP-dependent Clp protease ATP-binding subunit -
  AB348_RS09675 (AB348_09675) radA 1923320..1924693 (+) 1374 WP_003765058.1 DNA repair protein RadA Machinery gene
  AB348_RS09680 (AB348_09680) - 1924827..1925900 (+) 1074 WP_031649065.1 PIN/TRAM domain-containing protein -
  AB348_RS09685 (AB348_09685) ispD 1925920..1926618 (+) 699 WP_187123438.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB348_RS09690 (AB348_09690) ispF 1926611..1927084 (+) 474 WP_003765064.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AB348_RS09695 (AB348_09695) gltX 1927103..1928578 (+) 1476 WP_003765066.1 glutamate--tRNA ligase -
  AB348_RS09700 (AB348_09700) epsC 1928978..1929592 (+) 615 WP_003760085.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49949.54 Da        Isoelectric Point: 7.3272

>NTDB_id=677607 AB348_RS09675 WP_003765058.1 1923320..1924693(+) (radA) [Listeria innocua strain F6217]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=677607 AB348_RS09675 WP_003765058.1 1923320..1924693(+) (radA) [Listeria innocua strain F6217]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAGGCGACTCCAATAACTCAAATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCTATGGTACTTGTTGGTGGCGATCCTGGTATTGGTAAATCCACTCTTTT
ACTACAAGTGTCGGCACAACTTACCCTTACTAATAAGAAAGTATTATATATCTCCGGGGAAGAATCAATTAAGCAGACAA
AACTTCGTGCGGAGCGGCTACAAGTTTCCGGTGATAATTTGTATGTTTATGCAGAAACTAATTTAGAAGCTGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTCGTCATTGATTCAATTCAAACTGTTTATCATCCAGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACGGCTGCTTTAATGCGGATTGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGTCCGCGTTTACTTGAACATATGGTGGATACAGTGCTTTATTTTGAA
GGAGAACGTCACCATGCTTATCGAATTTTACGCGCGGTAAAAAACCGTTTTGGCTCGACAAATGAGATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAGGTTGCTAATCCATCTGAGGTATTCTTAGAGGAACGTTTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACACGCCCTGTACTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGA
AATGCCAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCAGCTGGCGGGGTTAAATTAGATGAACCAGCAGTTGATTTGGCTGTAG
CGGTTAGTGTGGCCTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCAAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643