Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG207_RS27370 Genome accession   NZ_CP109487
Coordinates   6050329..6051354 (+) Length   341 a.a.
NCBI ID   WP_329101759.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01439     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6045329..6056354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG207_RS27350 (OG207_27370) - 6045608..6047047 (-) 1440 WP_329101753.1 GH1 family beta-glucosidase -
  OG207_RS27355 (OG207_27375) - 6047044..6047868 (-) 825 WP_329101755.1 carbohydrate ABC transporter permease -
  OG207_RS27360 (OG207_27380) - 6047865..6048770 (-) 906 WP_329107927.1 sugar ABC transporter permease -
  OG207_RS27365 (OG207_27385) - 6048868..6050226 (-) 1359 WP_329101757.1 extracellular solute-binding protein -
  OG207_RS27370 (OG207_27390) cytR 6050329..6051354 (+) 1026 WP_329101759.1 LacI family DNA-binding transcriptional regulator Regulator
  OG207_RS27380 (OG207_27400) orn 6051643..6052245 (-) 603 WP_030008729.1 oligoribonuclease -
  OG207_RS27385 (OG207_27405) - 6052351..6053526 (-) 1176 WP_329101762.1 helix-turn-helix domain-containing protein -
  OG207_RS27390 (OG207_27410) - 6053903..6054223 (-) 321 WP_329107930.1 hypothetical protein -
  OG207_RS27395 (OG207_27415) - 6054669..6055202 (+) 534 WP_329101764.1 universal stress protein -
  OG207_RS27400 (OG207_27420) - 6055366..6055935 (+) 570 WP_329101766.1 GPR1/FUN34/YaaH family transporter -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36319.28 Da        Isoelectric Point: 6.8553

>NTDB_id=677591 OG207_RS27370 WP_329101759.1 6050329..6051354(+) (cytR) [Streptomyces sp. NBC_01439]
MNGHGRSGGRPTLEEVAARAGVGRGTASRVINGSSKVSEHTRVAVEAAVAELGYVPNRAARALAANRTDAIALVIPEPEA
RFFAEPYFSEVVRGVGAELADTEVQLVLTLAGSDRERRRLAQYLSGHRVDGVLLVSVHAGDPLPELLAELGIPTVISGRR
SAAETLPSVDSDNLAGAAEAVSHLLDRGRRAIATITGPLDVYGAQCRLDGYRQALALAGHPVDEQMIAVGDFTEEGGRRA
MRALLERRPGLDAVFAASDVMAAGARRELRAAGRRIPRDVALVGFDDSVVARHMDPPLTSVRQPIEEMGRTMTRMLLDRI
AGERAEVAAVLPNRLVVRESS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=677591 OG207_RS27370 WP_329101759.1 6050329..6051354(+) (cytR) [Streptomyces sp. NBC_01439]
ATGAACGGGCACGGGCGCAGTGGGGGACGACCGACCCTGGAGGAGGTCGCGGCGCGCGCCGGAGTCGGGCGCGGCACGGC
CTCCCGGGTGATCAACGGATCCTCCAAGGTCAGCGAGCACACCAGGGTCGCCGTCGAGGCGGCCGTGGCCGAGCTGGGGT
ACGTACCGAACCGCGCCGCGCGCGCCCTCGCGGCCAACCGCACCGACGCCATAGCCCTCGTGATCCCCGAGCCCGAGGCC
CGCTTCTTCGCCGAGCCCTACTTCTCCGAAGTGGTCCGCGGGGTCGGCGCCGAGCTCGCCGACACCGAGGTCCAGCTCGT
CCTCACCCTGGCGGGCAGCGACCGCGAGCGCCGCCGGCTCGCCCAGTACCTGTCCGGGCACCGCGTCGACGGGGTGCTGC
TCGTCTCCGTCCACGCCGGGGACCCACTGCCGGAGCTGCTGGCCGAGCTCGGCATCCCGACGGTGATCAGCGGCCGCCGC
TCCGCCGCCGAGACCCTGCCCAGCGTGGACTCCGACAACCTGGCGGGCGCGGCCGAGGCCGTGAGCCACCTCCTCGACCG
GGGCCGCCGCGCGATCGCCACGATCACCGGCCCGCTGGACGTGTACGGGGCCCAGTGCCGCCTCGACGGCTACCGGCAGG
CCCTGGCCCTCGCCGGACACCCCGTCGACGAGCAGATGATCGCGGTCGGCGACTTCACCGAGGAGGGCGGCCGGCGGGCC
ATGCGGGCCCTGCTGGAGCGCCGCCCCGGGCTCGACGCGGTCTTCGCCGCCTCGGACGTCATGGCGGCGGGCGCCCGGCG
GGAGCTGCGCGCGGCCGGCCGCCGGATCCCGCGGGACGTGGCGCTGGTCGGCTTCGACGACTCGGTGGTGGCCCGGCACA
TGGACCCGCCGCTGACCAGCGTCCGGCAGCCGATCGAGGAGATGGGCCGGACCATGACCCGGATGCTGCTGGACCGGATC
GCGGGGGAGCGGGCCGAGGTGGCCGCCGTGCTGCCGAACCGGCTGGTGGTCCGCGAGTCGTCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)

Bacterial regulatory proteins, lacI family (LacI)

(12-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.574

99.12

0.372
  cytR Vibrio parahaemolyticus RIMD 2210633

36.982

99.12

0.367