Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG207_RS25185 Genome accession   NZ_CP109487
Coordinates   5572933..5573910 (+) Length   325 a.a.
NCBI ID   WP_329101077.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01439     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5567933..5578910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG207_RS25165 (OG207_25190) - 5568916..5569620 (+) 705 WP_329101071.1 TetR/AcrR family transcriptional regulator -
  OG207_RS25170 (OG207_25195) - 5569683..5571215 (+) 1533 WP_329101073.1 MFS transporter -
  OG207_RS25175 (OG207_25200) - 5571334..5572095 (+) 762 WP_329107852.1 class III extradiol ring-cleavage dioxygenase -
  OG207_RS25180 (OG207_25205) - 5572198..5572728 (-) 531 WP_329101075.1 N-acetyltransferase family protein -
  OG207_RS25185 (OG207_25210) rpoS 5572933..5573910 (+) 978 WP_329101077.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG207_RS25190 (OG207_25215) - 5574030..5574986 (-) 957 WP_329101079.1 YafY family protein -
  OG207_RS25195 (OG207_25220) - 5575049..5576611 (+) 1563 WP_329101081.1 MFS transporter -
  OG207_RS25200 (OG207_25225) - 5576718..5578169 (-) 1452 WP_329101083.1 cellulose binding domain-containing protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36493.16 Da        Isoelectric Point: 4.8846

>NTDB_id=677585 OG207_RS25185 WP_329101077.1 5572933..5573910(+) (rpoS) [Streptomyces sp. NBC_01439]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDSTIERDGDAPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMAVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=677585 OG207_RS25185 WP_329101077.1 5572933..5573910(+) (rpoS) [Streptomyces sp. NBC_01439]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGTGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACAGCACGATAGAACGTGACGGGGACGCCCCGGCGCGCGAGGAGCTGGAG
GCGCTCGCCGCCGAGGGCGAGCGGGCCAAGGAAGTCTTCATCCGCTCGAACCTGCGCCTCGTCGTGGCCGTGGCCCGCCG
CTATCCGCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGGTCCGTGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGGCAGGCGATCACCCGGTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTCGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGGGAATTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACTCCACGGAGAAGCGCGTGGGTGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTCAACATGGCGGTCGACGACGACGGCGACACCCAGTTCGGTGACCTCCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTCTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACGCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAGCGGATGGCGCGCGACACCGGC
TTCGACGCCGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

92.308

0.369