Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB348_RS00665 Genome accession   NZ_CP095724
Coordinates   126888..128579 (+) Length   563 a.a.
NCBI ID   WP_185344228.1    Uniprot ID   -
Organism   Listeria innocua strain F6217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 121888..133579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB348_RS00640 (AB348_00640) - 122038..122919 (+) 882 WP_003766784.1 polyprenyl synthetase family protein -
  AB348_RS00645 (AB348_00645) - 123118..123318 (+) 201 WP_003719639.1 cold-shock protein -
  AB348_RS00650 (AB348_00650) dxs 123484..125404 (+) 1921 Protein_128 1-deoxy-D-xylulose-5-phosphate synthase -
  AB348_RS00655 (AB348_00655) - 125401..126225 (+) 825 WP_187126560.1 TlyA family RNA methyltransferase -
  AB348_RS00660 (AB348_00660) argR 126416..126865 (+) 450 WP_003766793.1 transcriptional regulator ArgR -
  AB348_RS00665 (AB348_00665) recN 126888..128579 (+) 1692 WP_185344228.1 DNA repair protein RecN Machinery gene
  AB348_RS00670 (AB348_00670) - 128709..129575 (+) 867 WP_247379592.1 phosphate acyltransferase -
  AB348_RS00675 (AB348_00675) buk 129712..130779 (+) 1068 WP_187122265.1 butyrate kinase -
  AB348_RS00680 (AB348_00680) lpdA 130793..132220 (+) 1428 WP_185484171.1 dihydrolipoyl dehydrogenase -
  AB348_RS00685 (AB348_00685) - 132245..133240 (+) 996 WP_187122266.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63552.32 Da        Isoelectric Point: 5.2644

>NTDB_id=677577 AB348_RS00665 WP_185344228.1 126888..128579(+) (recN) [Listeria innocua strain F6217]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAAATLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=677577 AB348_RS00665 WP_185344228.1 126888..128579(+) (recN) [Listeria innocua strain F6217]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAACTGCAAGGTTTGTTTGCCTTAGCAGAAGATAATCTTGCCTGCCGAAATGCG
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGTATTAACGGAAAATTAGTAACTACAGTATTGCTACGTCAAATTGGTTCTAAATTAATAGATATTCATAGTCAACATG
AGCACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTGCGGATAAAATTAAACCTGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAACGACTCGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCTAATTTGCAAGCTGGGGAAGAAGATCGTT
TGTTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTACACGGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGTCAAATGGAAGCGGCTGCGAGTATTCATACTGATTATAAAGC
AGTTAGTGAGGCAATATCATCCAGTTACTATATGCTTGAAGACAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTCAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTGAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAGCTGACGGATAGTGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTTACTGACATCCGTAAAAAAGCAG
CAGCCACGTTAGAAAAACAAATTAAACAAGAACTAAATCAATTATATATGGAAAAAGCTATTTTCAGCGTTCACTTTGAG
TCTGACAAAACAGAACTAACAGAATCAGGCCAAGATAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAACCGCTAAA
ACCACTTGCAAAAATCGCTTCTGGCGGTGAATTATCACGAATGATGTTAGCGCTAAAAACTATTTTTTCAAGACATCAAG
GTATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTTGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCTAACCACCATTACTACAT
CACAAAAAAAGTACAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATTAGCC
GTATGATTGCTGGGATAGAAGTGACCGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCAGAAAAAGTAAAA
CAAACCTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531