Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMZ19_RS14305 Genome accession   NZ_CP095723
Coordinates   2724415..2725788 (+) Length   457 a.a.
NCBI ID   WP_160464904.1    Uniprot ID   -
Organism   Listeria innocua strain 2015L-6714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2719415..2730788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ19_RS14285 (MXK34_14285) - 2719760..2720218 (+) 459 WP_003760062.1 CtsR family transcriptional regulator -
  QMZ19_RS14290 (MXK34_14290) - 2720231..2720749 (+) 519 WP_247412048.1 UvrB/UvrC motif-containing protein -
  QMZ19_RS14295 (MXK34_14295) - 2720746..2721768 (+) 1023 WP_003765054.1 protein arginine kinase -
  QMZ19_RS14300 (MXK34_14300) - 2721797..2724259 (+) 2463 WP_160464903.1 ATP-dependent Clp protease ATP-binding subunit -
  QMZ19_RS14305 (MXK34_14305) radA 2724415..2725788 (+) 1374 WP_160464904.1 DNA repair protein RadA Machinery gene
  QMZ19_RS14310 (MXK34_14310) - 2725922..2726995 (+) 1074 WP_160464905.1 PIN/TRAM domain-containing protein -
  QMZ19_RS14315 (MXK34_14315) ispD 2727015..2727713 (+) 699 WP_247412051.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QMZ19_RS14320 (MXK34_14320) ispF 2727706..2728179 (+) 474 WP_003770122.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QMZ19_RS14325 (MXK34_14325) gltX 2728198..2729673 (+) 1476 WP_247412054.1 glutamate--tRNA ligase -
  QMZ19_RS14330 (MXK34_14330) epsC 2730073..2730687 (+) 615 WP_003760085.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49935.52 Da        Isoelectric Point: 7.3272

>NTDB_id=677572 QMZ19_RS14305 WP_160464904.1 2724415..2725788(+) (radA) [Listeria innocua strain 2015L-6714]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=677572 QMZ19_RS14305 WP_160464904.1 2724415..2725788(+) (radA) [Listeria innocua strain 2015L-6714]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCGAAGGCGACTCCAATAACTCAAATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACAAATATGCCGGAATTAAAT
AGAGTACTTGGTGGCGGAGTTGTTCCCGGATCTATGGTGCTTGTTGGTGGCGATCCTGGCATTGGTAAATCCACTCTTTT
ACTACAAGTGTCGGCACAACTTACACTTACTAATAAGAAAGTATTATATATTTCCGGGGAAGAATCAATTAAGCAAACGA
AACTTCGTGCGGAGCGGTTGCAAGTTTCCGGTGATAATTTGTATGTTTATGCAGAAACTAATTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTCGTCATTGATTCTATTCAAACTGTTTATCATCCAGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACAGCTGCTTTAATGCGGATTGCTAAAATGCAAAATATTGCTATTTTCATTG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGACCGCGTTTACTTGAACATATGGTGGATACAGTACTTTATTTTGAA
GGAGAACGTCACCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAGATGGGGATATTTGA
GATGCGTGATGTTGGTCTTGTGGAGGTTGCCAATCCATCTGAGGTGTTCTTAGAGGAACGTTTAGAAGGAGCTTCGGGAT
CAACTGTGGTAGCTTCGATGGAAGGGACACGCCCTGTGCTTGTGGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGA
AACGCCAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATCTAAAGGCAGCTGGCGGAGTTAAATTAGATGAACCAGCAGTTGATTTGGCAGTAG
CGGTTAGTGTGGCTTCTAGTTATCGTGATAAACCAACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCAAAATTAGGCTTTAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAATACCAAAAGACGTGCAGGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643